View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9307-LTR4-TNT-insertion-4 (Length: 545)
Name: F9307-LTR4-TNT-insertion-4
Description: F9307-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9307-LTR4-TNT-insertion-4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 8 - 536
Target Start/End: Complemental strand, 29860835 - 29860307
Alignment:
| Q |
8 |
cctctccatacagagagaggaagcctatatattaacgagtcagtttaaaatgaaaagaaaatccttatatgtttatagcatgtgaagttgtaaaaaagta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29860835 |
cctctccatacagagagaggaagcctatatattaacgagtcagtttaaaatgaaaagaaaatccttatatgtttatagcatgtgaagttgtaaaaaagta |
29860736 |
T |
|
| Q |
108 |
aatgaactttaacactgataagtcaagtgtgtttttatgctttgatcaaaatatgttactcatgtaggttggaaaacctgcatgactagatatagccatc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29860735 |
aatgaactttaacactgataagtcaagtgtgtttttatgctttgatcaaaatatgttactcatgtaggttggaaaacctgcatgactagatatagccatc |
29860636 |
T |
|
| Q |
208 |
ataaagaaggaaatttatcgacctagcaagccaataatccaataataatcagcataatcttcaaagggataaactagatataatgttatcaatcaacaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29860635 |
ataaagaaggaaatttatcgacctagcaagccaataatccaataataatcagcataatcttcaaagggataaactagatataatgttatcaatcaacaat |
29860536 |
T |
|
| Q |
308 |
gagaaagaaaagatttaaatctatatcctctgtggatattcccaacaatcgaaattggaaggggtgataaactatctaagccatttggtaatgcttcaaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29860535 |
gagaaagaaaagatttaaatctatatcctctgtggatattcccaacaatcgaaattggaaggggtgataaactatctaagccatttggtaatgcttcaaa |
29860436 |
T |
|
| Q |
408 |
gcccatttggtaaaacaatcttattctaattcacatatgttgtctttggcttgaccatgaaatcaaaatatgatgattcaatacaagtgtcttctatgcc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29860435 |
gcccatttggtaaaacaatcttattctaattcacatatgttgtctttggcttgaccatgaaatcaaaatatgatgattcaatacaagtgtcttctatgcc |
29860336 |
T |
|
| Q |
508 |
accaagtatgtaatcaaacacaacaattg |
536 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
29860335 |
accaagtatgtaatcaaacacaacaattg |
29860307 |
T |
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