View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9307-LTR4-TNT-insertion-6 (Length: 137)

Name: F9307-LTR4-TNT-insertion-6
Description: F9307-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9307-LTR4-TNT-insertion-6
F9307-LTR4-TNT-insertion-6
[»] chr2 (1 HSPs)
chr2 (34-129)||(44681823-44681918)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 44681918 - 44681823
Alignment:
34 ccaatatacgattaaaccctaaatgcatgtttgtgttaacggcggtcaagtttaaaagtattacgatatacttcgtcttgtacagagacttgatta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44681918 ccaatatacgattaaaccctaaatgcatgtttgtgttaacggcggtcaagtttaaaagtattacgatatacttcgtcttgtacagagacttgatta 44681823  T

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