View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9309-LTR4-TNT-insertion-5 (Length: 155)

Name: F9309-LTR4-TNT-insertion-5
Description: F9309-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9309-LTR4-TNT-insertion-5
F9309-LTR4-TNT-insertion-5
[»] chr3 (1 HSPs)
chr3 (10-146)||(29206736-29206872)
[»] chr4 (1 HSPs)
chr4 (64-145)||(38379376-38379457)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 7e-72; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 7e-72
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 29206872 - 29206736
Alignment:
10 taataattaatcaagatatatgatactaatagtgagagtgagagcaatattttactaattaattcaatatggaacagatgattgaagaggaagagatacg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29206872 taataattaatcaagatatatgatactaatagtgagagtgagagcaatattttactaattaattcaatatggaacagatgattgaagaggaagagatacg 29206773  T
110 tttgcttaggaaagaaatggttccacgagctcaattg 146  Q
    |||||||||||||||||||||||||||||||||||||    
29206772 tttgcttaggaaagaaatggttccacgagctcaattg 29206736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 38379376 - 38379457
Alignment:
64 ctaattaattcaatatggaacagatgattgaagaggaagagatacgtttgcttaggaaagaaatggttccacgagctcaatt 145  Q
    |||||||||  ||| ||||| |||||||||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||    
38379376 ctaattaatgaaatgtggaatagatgattgaagaggaagagatacgtgtgctaaggaaggatatggttccaagagctcaatt 38379457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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