View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9310-LTR4-TNT-insertion-1 (Length: 84)

Name: F9310-LTR4-TNT-insertion-1
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9310-LTR4-TNT-insertion-1
F9310-LTR4-TNT-insertion-1
[»] chr5 (2 HSPs)
chr5 (8-75)||(41170496-41170563)
chr5 (36-71)||(41168595-41168630)


Alignment Details
Target: chr5 (Bit Score: 68; Significance: 5e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-31
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 41170496 - 41170563
Alignment:
8 ggaagctcctggaataaagtcaccgattaatgtatttggactttactcttaaacatggagcacaattg 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41170496 ggaagctcctggaataaagtcaccgattaatgtatttggactttactcttaaacatggagcacaattg 41170563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 41168595 - 41168630
Alignment:
36 aatgtatttggactttactcttaaacatggagcaca 71  Q
    |||||||||||||||||||||||||| |||||||||    
41168595 aatgtatttggactttactcttaaacctggagcaca 41168630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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