View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9310-LTR4-TNT-insertion-3 (Length: 251)
Name: F9310-LTR4-TNT-insertion-3
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9310-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 47018542 - 47018310
Alignment:
| Q |
10 |
atccccgtgtgattatggaaataaaagctcctttgaagtgcagacggctcctatcagtgatggtgttcttccaggaataatacgccaactagtgcttgag |
109 |
Q |
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| T |
47018542 |
atccccgtgtgattatggaaataaaagctcttttgaagtgcagacggctcctatcagtgatggtgttcttccaggaataatacgccaactagtgcttgag |
47018443 |
T |
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| Q |
110 |
tatggtttggttataaatataatctagnnnnnnnactgttatgtttttccttgacgacaaaagaactacaccccttctagaaaaatttgccaaaatttta |
209 |
Q |
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| T |
47018442 |
tatggtttggttataaatataatctagtttttttactgttatgtttttccttgacgacaaaagaactacaccccttctagaaaaatttgccaaaatttta |
47018343 |
T |
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| Q |
210 |
tgttatttacagtgggctaaagttcaacaattg |
242 |
Q |
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| T |
47018342 |
tgttatttacagtgggctaaagttcaacaattg |
47018310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 10719296 - 10719183
Alignment:
| Q |
19 |
tgattatggaaataaaagctcctttgaagtgcagacggctcctatcagtgatggtgttcttccaggaataatacgccaactagtgcttgagtatggtttg |
118 |
Q |
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|||| |||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
10719296 |
tgatcatggaaataaaaactcttttgaagtgcagacagctcctataagtgatggtgttcttccagggataatacgtcaactagtgcttgagtatggtttg |
10719197 |
T |
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| Q |
119 |
gttataaatataat |
132 |
Q |
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|||||||| |||| |
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| T |
10719196 |
tttataaatttaat |
10719183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 47047494 - 47047381
Alignment:
| Q |
19 |
tgattatggaaataaaagctcctttgaagtgcagacggctcctatcagtgatggtgttcttccaggaataatacgccaactagtgcttgagtatggtttg |
118 |
Q |
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|||| |||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
47047494 |
tgatcatggaaataaaaactcttttgaagtgcagacagctcctatcaatgatggtgttcttccagggataatacgtcaactagtgcttgagtatggtttg |
47047395 |
T |
|
| Q |
119 |
gttataaatataat |
132 |
Q |
| |
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|||||||| |||| |
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|
| T |
47047394 |
tttataaatctaat |
47047381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 10714489 - 10714602
Alignment:
| Q |
19 |
tgattatggaaataaaagctcctttgaagtgcagacggctcctatcagtgatggtgttcttccaggaataatacgccaactagtgcttgagtatggtttg |
118 |
Q |
| |
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|||| ||||||| |||| ||| ||| |||||||||| |||||| |||||||||||||| ||| |||||||| ||||||||||||||||||| || | |
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| T |
10714489 |
tgatcatggaaaaaaaaactcttttaaagtgcagacaactcctaatagtgatggtgttctattagggataatacgtcaactagtgcttgagtatgattcg |
10714588 |
T |
|
| Q |
119 |
gttataaatataat |
132 |
Q |
| |
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|||||||| |||| |
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|
| T |
10714589 |
tttataaatctaat |
10714602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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