View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9310-LTR4-TNT-insertion-7 (Length: 223)
Name: F9310-LTR4-TNT-insertion-7
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9310-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 32164626 - 32164833
Alignment:
| Q |
6 |
cacaaattacacaaaacatagttgcagttttgcatttaagtagactttgttcgcagtctttctgctagttactaaatattgtgttaataaatatgaaagt |
105 |
Q |
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| T |
32164626 |
cacaaattacacaaaacatagttgcagttttgcatttaagtagactttgttcgcagtctttctgctagttactaaatattgtgttaataaatatgaaagt |
32164725 |
T |
|
| Q |
106 |
tagaagactaaggaattacaagtaaatcttctcctgttttctttatatcaattatggaagcaccatttgttgcctcagaaatgagtgaagtatcatcaga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32164726 |
tagaagactaaggaattacaagtaaatcttctcctgttttctttatatcaattatggaagcaccatttgttgcctcagaaatgagtgaagtatcatcaga |
32164825 |
T |
|
| Q |
206 |
attgaatt |
213 |
Q |
| |
|
|||||||| |
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| T |
32164826 |
attgaatt |
32164833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 32167642 - 32167710
Alignment:
| Q |
145 |
tctttatatcaattatggaagcaccatttgttgcctcagaaatgagtgaagtatcatcagaattgaatt |
213 |
Q |
| |
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||||||||||||| |||||||||||||| ||| |||||||||||||||| |||| ||||||||||| |
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| T |
32167642 |
tctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcattagaattgaatt |
32167710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 27359460 - 27359395
Alignment:
| Q |
145 |
tctttatatcaattatggaagcaccatttgttgcctcagaaatgagtgaagtatcatcagaattga |
210 |
Q |
| |
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|||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |||||| |
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| T |
27359460 |
tctttatatcaattatagaagcaccacccaatgcttcagaaatgagtgaagtatcatcaaaattga |
27359395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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