View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9310-LTR4-TNT-insertion-8 (Length: 209)
Name: F9310-LTR4-TNT-insertion-8
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9310-LTR4-TNT-insertion-8 |
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| [»] scaffold0458 (2 HSPs) |
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Alignment Details
Target: scaffold0458 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 3126 - 2979
Alignment:
| Q |
10 |
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3126 |
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
3027 |
T |
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| Q |
110 |
catttggtaagcaaatttaatacttggacatattcaatataccattac |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3026 |
catttggtaagcaaatttaatacttggacatattcaatataccattac |
2979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 13167 - 13020
Alignment:
| Q |
10 |
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
109 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13167 |
aacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
13068 |
T |
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| Q |
110 |
catttggtaagcaaatttaatacttggacatattcaatataccattac |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13067 |
catttggtaagcaaatttaatacttggacatattcaatataccattac |
13020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 39450495 - 39450642
Alignment:
| Q |
10 |
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
109 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39450495 |
aacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
39450594 |
T |
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| Q |
110 |
catttggtaagcaaatttaatacttggacatattcaatataccattac |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39450595 |
catttggtaagcaaatttaatacttggacatattcaatataccattac |
39450642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 39459882 - 39460029
Alignment:
| Q |
10 |
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
109 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39459882 |
aacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
39459981 |
T |
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| Q |
110 |
catttggtaagcaaatttaatacttggacatattcaatataccattac |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39459982 |
catttggtaagcaaatttaatacttggacatattcaatataccattac |
39460029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 39471367 - 39471514
Alignment:
| Q |
10 |
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
109 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471367 |
aacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
39471466 |
T |
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| Q |
110 |
catttggtaagcaaatttaatacttggacatattcaatataccattac |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471467 |
catttggtaagcaaatttaatacttggacatattcaatataccattac |
39471514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 24061770 - 24061651
Alignment:
| Q |
10 |
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
109 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
24061770 |
aacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcagcca |
24061671 |
T |
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| Q |
110 |
catttggtaagcaaatttaa |
129 |
Q |
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| T |
24061670 |
cctttggtaagaaaaattaa |
24061651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 44476015 - 44475901
Alignment:
| Q |
10 |
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta |
109 |
Q |
| |
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||||| ||||||||||||||||||||||| || || |||| ||| ||||||| || || || |||||| ||||||||| ||||| |||||||| || | |
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| T |
44476015 |
aacaagaagtacttgatgatggttggagatgggattaatcgaacgattatcactggtgatcataatgttattgatggttctacaacgttcaattcagcaa |
44475916 |
T |
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| Q |
110 |
catttggtaagcaaa |
124 |
Q |
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||||||||||||||| |
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| T |
44475915 |
catttggtaagcaaa |
44475901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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