View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9310-LTR4-TNT-insertion-9 (Length: 207)
Name: F9310-LTR4-TNT-insertion-9
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9310-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 14999726 - 14999918
Alignment:
| Q |
8 |
gctaacgaatactacctttcatattcgatatccttccttccttcctcccaaatccaaatggcttcaagggaagaagatcacaaggttagttatgattatt |
107 |
Q |
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| T |
14999726 |
gctaacgaatactacctttcatattcgatatccttccttccttcctcccaaatccaaatggcttcaagggaagaagatcacaaggttagttatgattatt |
14999825 |
T |
|
| Q |
108 |
gtaagcaacaaatcctctcacttcccaaagagaaagggttatcaatccaagatttatattttttcc-aaagtttttggtgtccaccaatatta |
199 |
Q |
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| T |
14999826 |
gtaagcaacaaatcctctcacttcccaaagagaaagggttatcaatccaagatttatattttttccaaaagtttttggtgtccaccaatatta |
14999918 |
T |
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