View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9311-LTR4-TNT-insertion-1 (Length: 236)
Name: F9311-LTR4-TNT-insertion-1
Description: F9311-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9311-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 46793830 - 46793655
Alignment:
| Q |
9 |
gggcaagaagaaatcatggatcagagaaagtactaaatattttgtttagattgtgtttgcagtaaggaaggaatgtcactggatagtttgttttgcttca |
108 |
Q |
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| T |
46793830 |
gggcaagaagaaatcatggatcagagaaagtactaaatattttgtttagattgtgtttgcagtaaggaaggaatgtcactggatagtttgttttgcttca |
46793731 |
T |
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| Q |
109 |
aggtctctcagcatcaaatttcaaattaaaaggttattgttgttgtttttcctaagcaaattgatatcataagtca |
184 |
Q |
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| T |
46793730 |
aggtctctcagcatcaaatttcaaattaaaaggttattgttgttgtttttcctaagcaaattgatatcataagtca |
46793655 |
T |
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