View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9311-LTR4-TNT-insertion-10 (Length: 496)
Name: F9311-LTR4-TNT-insertion-10
Description: F9311-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9311-LTR4-TNT-insertion-10 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 7 - 486
Target Start/End: Original strand, 37212728 - 37213207
Alignment:
| Q |
7 |
aatgtcctcttgatatatgagggcgtgaacatcttgacaaagatgttgttccggtttcaacaggcattttagaggatctcaaagagcatcggcgaccaga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37212728 |
aatgtcctcttgatatatgagggcgtgaacatcttgacaaagatgttgttccggtttcaacaggcattttagaggatctcaaagagcatcggcgaccaga |
37212827 |
T |
|
| Q |
107 |
agatctcaaagtgcaacggagatcagaaatcattgtggaatccaaatttaatcgccttctagtagagacagggcaatccctagactctgactgaacatat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37212828 |
agatctcaaagtgcaacggagatcagaaatcattgtggaatccaaatttaatcgccttctagtagagacagggcaatccctagactctgactgaacatat |
37212927 |
T |
|
| Q |
207 |
ccacaaggcagcaagttgaagttagtgttaaatttaaaataacaagacagataatattttttagagaaaccgaggaaacatgtcattgtacattaagtcc |
306 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37212928 |
ccacaaggcaacaagttgaagttagtgttaaatttaaaataacaagacagataatattttttagagaaaccgaggaaacatgtcattgtacattaagtcc |
37213027 |
T |
|
| Q |
307 |
taagcatatacattgatgaagaggttttccattgctataaacaaccaaaaatgttctattcaaggctaaactaaatattatagaaaatttcctttaacac |
406 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37213028 |
taagcatatacattgatgaagaggttttccattgttataaacaaccaaaaatgttctattcaaggctaaactaaatattatagaaaatttcctttaacac |
37213127 |
T |
|
| Q |
407 |
ttacttcctactgtgagtaaaaatgagaagatcacttttcatgtgtggtgaacaaaaagatgttacttttttagttatta |
486 |
Q |
| |
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| T |
37213128 |
ttacttcctactgtgagtaaaaatgagaagatcacttttcatgtgtggtgaacaaaaagatgttacttttttagttatta |
37213207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 37218077 - 37218281
Alignment:
| Q |
7 |
aatgtcctcttgatatatgagggcgtgaacatcttgacaaagatgttgttccggtttcaacaggcattttagaggatctcaaagagcatcggcgaccaga |
106 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37218077 |
aatgtcttcttgatatatgagggcgtgaacatcttgacaaagatgttgttccggtttcaacaggcattttagaggatctcaaagagcatcggcgaccaga |
37218176 |
T |
|
| Q |
107 |
agatctcaaagtgcaacggagatcagaaatcattgtggaatccaaatttaatcgccttctagtagagacagggcaatccctagactctgactgaacatat |
206 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| | ||||||| | |||||| || |||| ||||||||||| ||||| ||||||||||| |
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| T |
37218177 |
agatctcaaagtgcgacggagatcagaaatcattgtggactttggatttaatttctttctaggagtgacacggcaatccctatactctaactgaacatat |
37218276 |
T |
|
| Q |
207 |
ccaca |
211 |
Q |
| |
|
|||| |
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|
| T |
37218277 |
acaca |
37218281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 37196070 - 37196127
Alignment:
| Q |
309 |
agcatatacattgatgaagaggttttccattgctataaacaaccaaaaatgttctatt |
366 |
Q |
| |
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||||||| |||||||||||||||||| | ||||||||||||||||||| |||| |||| |
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| T |
37196070 |
agcatatgcattgatgaagaggttttgctttgctataaacaaccaaaagtgttttatt |
37196127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 37203774 - 37203829
Alignment:
| Q |
306 |
ctaagcatatacattgatgaagaggttttccattgctataaacaaccaaaaatgtt |
361 |
Q |
| |
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|||||||||||||||||| |||||||||| | ||| ||||||||||||||| |||| |
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| T |
37203774 |
ctaagcatatacattgataaagaggttttgctttgttataaacaaccaaaagtgtt |
37203829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 37203611 - 37203657
Alignment:
| Q |
170 |
agagacagggcaatccctagactctgactgaacatatccacaaggca |
216 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||| ||||||||| |
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| T |
37203611 |
agagacagggcaatcccaagactcagactgaacatatacacaaggca |
37203657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 7528493 - 7528571
Alignment:
| Q |
12 |
cctcttgatatatgagggcgtgaacatcttgacaaagatgttgttccggtttcaacaggcattttagaggatctcaaag |
90 |
Q |
| |
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||||||||||||||||| |||||| || |||||||||||||||| |||| ||||||| ||||||| |||||||||| |
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| T |
7528493 |
cctcttgatatatgaggctctgaacacctacacaaagatgttgttccagttttaacaggcgttttagacgatctcaaag |
7528571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 7528662 - 7528755
Alignment:
| Q |
208 |
cacaaggcagcaagttgaagttagtgttaaatttaaaataacaa---gacagataatattttttagagaaaccgaggaaacatgtcattgtacat |
299 |
Q |
| |
|
||||||||| |||||||||||||| |||||| ||||| ||||| |||||| | | | |||||||||||| ||||||||||||||||||||| |
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|
| T |
7528662 |
cacaaggcaacaagttgaagttaggattaaatctaaaacaacaacaagacaga-attttattttagagaaactcaggaaacatgtcattgtacat |
7528755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 413145 - 413109
Alignment:
| Q |
263 |
ttttttagagaaaccgaggaaacatgtcattgtacat |
299 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||| |
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| T |
413145 |
ttttttagagaaacctaagaaacatgtcattgtacat |
413109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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