View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9311-LTR4-TNT-insertion-11 (Length: 318)

Name: F9311-LTR4-TNT-insertion-11
Description: F9311-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9311-LTR4-TNT-insertion-11
F9311-LTR4-TNT-insertion-11
[»] chr2 (2 HSPs)
chr2 (9-182)||(39762370-39762543)
chr2 (268-308)||(39762244-39762284)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 39762543 - 39762370
Alignment:
9 acgtgtcatatcatatgtttgaannnnnnnnnnnaaaattaagaaacttattttatgaaatcatcnnnnnnnnnnttattttttacgggtaatttatgaa 108  Q
    |||||||||||||||||||||||           |||||||||||||||||||||||||||||||          |||||||||||||||||||||||||    
39762543 acgtgtcatatcatatgtttgaatttttttttttaaaattaagaaacttattttatgaaatcatcaaaaaaaaaattattttttacgggtaatttatgaa 39762444  T
109 atcattaaaaattactttaannnnnnnaagggaaaaattacttttatctaaatactaattacttttcatactat 182  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
39762443 atcattaaaaattactttaatttttttaagggaaaaattacttttatctaaatactaattacttttcatactat 39762370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 39762284 - 39762244
Alignment:
268 atttttcactccaaaatttattttttaagtttaatacatta 308  Q
    |||||||||||||||||||||||||||||||||||||||||    
39762284 atttttcactccaaaatttattttttaagtttaatacatta 39762244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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