View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9311-LTR4-TNT-insertion-13 (Length: 500)
Name: F9311-LTR4-TNT-insertion-13
Description: F9311-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9311-LTR4-TNT-insertion-13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 7 - 491
Target Start/End: Original strand, 11807442 - 11807926
Alignment:
| Q |
7 |
aaaaccaatgaccaaatgacaacataatcaagtccatttgatctatatcctttgcccaattctcacttacatgatccaaatgtattgtattataatttgg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11807442 |
aaaaccaatgaccaaatgacaacataatcaagtccatttgatctatatcctttgcccaattctcacttacatgatccaaatgtattgtattataatttgg |
11807541 |
T |
|
| Q |
107 |
cccttcctttcttctttgatcacccttcacaagaaatggtgcccaataggatgtcaagtttgcattgtaagaaggaaaataccacctcccaatagagcct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11807542 |
cccttcctttcttctttgatcacccttcacaagaaatggtgcccaataggatgtcaagtttgcattgtaagaaggaaaataccacctcccaatagagcct |
11807641 |
T |
|
| Q |
207 |
atatgattgatatatttaggttttgaaacagtggataataagcaaataagggactctagttggttcctagataaagagtctccaacaaaaactatgttca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11807642 |
atatgattgatatatttaggttttgaaacagtggataataagcaaataagggactctagttggttcctagataaagagtctccaacaaaaactatgttca |
11807741 |
T |
|
| Q |
307 |
tgttgctcatgagtttaagaaaagtgtttgggtcaaaaattggaagatcacactcatttggtttccatctccaatataggtagcttgtgtcaggtcttcc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11807742 |
tgttgctcatgagtttaagaaaagtgtttgggtcaaaaattggaagatcacactcatttggtttccatctccaatataggtagcttgtgtcaggtcttcc |
11807841 |
T |
|
| Q |
407 |
attgacaatgcaattctgattttccctgatctcattacatgttgtcccattatacaaagggcctctcttgtcatgaacccaattg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11807842 |
attgacaatgcaattctgattttccctgatctcattacatgttgtcccattatacaaagggcctctcttgtcatgaacccaattg |
11807926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 491
Target Start/End: Original strand, 44248525 - 44249008
Alignment:
| Q |
8 |
aaaccaatgaccaaatgacaacataatcaagtccatttgatctatatcctttgcccaattctcacttacatgatccaaatgtattgtattataatttggc |
107 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| ||||||||||||||| | ||||| ||| | |||| ||||| |||| |||||||||||| | ||| |
|
|
| T |
44248525 |
aaaccaatgaccaaatgacaacacaatcgagtcaatttgatctatatccctagcccacatctgatttacttgatctaaatatattgtattatattgtgga |
44248624 |
T |
|
| Q |
108 |
ccttcctttcttctttgatcacccttcacaagaaatggtgcccaataggatgtcaagtttgcattgtaagaaggaaaataccacctcccaatagagccta |
207 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
44248625 |
ccatcctttattctttgatcacccttcacaagaaaaggtgaccaataggctgtcaagtttgcgttgtaagaaggaaagtaccaccttccatcagagccta |
44248724 |
T |
|
| Q |
208 |
tatgattgatatatttaggttttgaaacagtggataataagcaaataagggactctagttggttcctagataaagagtctccaacaaaaactatgttcat |
307 |
Q |
| |
|
|||| | || | |||||| |||| ||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||| |||||||||| |
|
|
| T |
44248725 |
tatggtggacacgtttagggcttgatacagtggataataagcaaataagggactctatttggttatttgctaaagagtctccaacaaaagctatgttcat |
44248824 |
T |
|
| Q |
308 |
gttgctcatgagtttaagaaaagtgtttgggtcaaaaattggaagatcacactcatttggtttccatctccaatataggtagcttgtgtcaggtcttcca |
407 |
Q |
| |
|
||| | ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44248825 |
gtttttgatgagtttaagaaaagtgtttggttcaaaaattggaagatcacactcacttggtttccatctccaatataggtagcttgagtcaggtcttcca |
44248924 |
T |
|
| Q |
408 |
ttgacaatgcaattctgattttccctgatctcattacatgttgtcccattatacaaagggcctctcttgtcatgaacccaattg |
491 |
Q |
| |
|
||||| |||||||||||| ||| | | || ||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44248925 |
ttgacgatgcaattctgacttttctttatatcactacatgttgttccattatacaaaggagctctcttgtcatgaacccaattg |
44249008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 487
Target Start/End: Complemental strand, 51383223 - 51382750
Alignment:
| Q |
8 |
aaaccaatgaccaaatgacaacataatcaagtccatttgatctatatcctttgcccaattctcacttacatgatccaaatgtattgtattataatttggc |
107 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||| | ||||| ||||| | ||||||||||||| |||||||||||| ||||| |
|
|
| T |
51383223 |
aaaccaatgaccaaatgataacacaatcaagtccatttgatctatatctctagcccacctctcattgacatgatccaaatacattgtattataaattggc |
51383124 |
T |
|
| Q |
108 |
ccttcctttcttctttgatcacccttcacaagaaatggtgcccaataggatgtcaagtttgcattgtaagaaggaaaataccacctcccaatagagccta |
207 |
Q |
| |
|
||| ||| |||||||| ||||| |||||||||| || | |||||| | | |||||||||||||| ||||||||| |||||| | | ||||||||| |
|
|
| T |
51383123 |
cctctgttttttctttgaacacccctcacaagaaaaggcgaccaataaaaagacaagtttgcattgtgagaaggaaagtaccactttc---tagagccta |
51383027 |
T |
|
| Q |
208 |
tatgattgatatatttaggttttgaaacagtggataataagcaaataagggactctagttggttcctagataaagagtctccaacaaaaactatgttcat |
307 |
Q |
| |
|
||| || | ||||||||||||| |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |||| | ||| |
|
|
| T |
51383026 |
gatggcggacacgtttaggttttgaagcagtggataataagcatataagggactcaatttggttcctagataaagagtctccaacaaaagctatatgcat |
51382927 |
T |
|
| Q |
308 |
gttgctcatgagtttaagaaaagtgtttgggtcaaaaattggaagatcacactcatttggtttccatctccaatataggtagcttgtgtcaggtcttcca |
407 |
Q |
| |
|
|||| | |||||||||||||| |||||||| |||||| ||| ||||| ||||||| |||||||||||||||||| |||||| ||| ||| ||||||||| |
|
|
| T |
51382926 |
gttgttgatgagtttaagaaatgtgtttggttcaaaatttgaaagatgacactcacttggtttccatctccaatgaaggtagtttgagtccggtcttcca |
51382827 |
T |
|
| Q |
408 |
ttgacaatgcaattctgattttccctgatctcattacatgttgtcccattatacaaagggcctctcttgtcatgaaccca |
487 |
Q |
| |
|
|| || |||||||| ||| ||| | ||||| ||||||||||| |||||||||||||| |||| |||||| ||||||| |
|
|
| T |
51382826 |
ttaacgatgcaattttgacttttcgtgatc---ttacatgttgttccattatacaaaggagctctattgtcacgaaccca |
51382750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 8e-90; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 240 - 491
Target Start/End: Complemental strand, 15274608 - 15274357
Alignment:
| Q |
240 |
gataataagcaaataagggactctagttggttcctagataaagagtctccaacaaaaactatgttcatgttgctcatgagtttaagaaaagtgtttgggt |
339 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||||| | |
|
|
| T |
15274608 |
gataataagcaaacaagggactctatttggttcctagctaaagagtctccaacaaaagctatgttcatgttgttgatgagtgtaagaaaagtgtttggtt |
15274509 |
T |
|
| Q |
340 |
caaaaattggaagatcacactcatttggtttccatctccaatataggtagcttgtgtcaggtcttccattgacaatgcaattctgattttccctgatctc |
439 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| || ||| | ||||||| |
|
|
| T |
15274508 |
caaaaattggaagatcacactcctttggtttccatctccaatataggtagtttgagtcaggtcttccattgacgatgcaatttcgacttttcttgatctc |
15274409 |
T |
|
| Q |
440 |
attacatgttgtcccattatacaaagggcctctcttgtcatgaacccaattg |
491 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
15274408 |
actacatgttgttccattatacaaagggcctctcttgtcattaatccaattg |
15274357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 15284036 - 15283852
Alignment:
| Q |
7 |
aaaaccaatgaccaaatgacaacataatcaagtccatttgatctatatcctttgcccaattctcacttacatgatccaaatgtattgtattataatttgg |
106 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||| |||||| ||||||| | ||| ||||||||||||||| |||||||||||| | ||| |
|
|
| T |
15284036 |
aaaaccaatgaccaaatgacaaaacaatcaagtccattttatccatatcccttgcccacatttcatttacatgatccaaatatattgtattatattgtgg |
15283937 |
T |
|
| Q |
107 |
cccttcctttcttctttgatcacccttcacaagaaatggtgcccaataggatgtcaagtttgcattgtaagaaggaaaataccac |
191 |
Q |
| |
|
||| || ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
15283936 |
cccatcattttttctttgatcacccttcacaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccac |
15283852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 15262543 - 15262144
Alignment:
| Q |
8 |
aaaccaatgaccaaatgacaacataatcaagtccatttgatctatatcctttgcccaattctcacttacatgatccaaatgtattgtattataatttggc |
107 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||| ||| ||| |||||||| ||| | || || | ||| |||||| ||||||||||||| |||||||| |
|
|
| T |
15262543 |
aaaccaatttccaaatgataacacaatcaagtcgattccatccatatccttcgccaatttttcgttaacacgatccagatgtattgtattaaaatttggc |
15262444 |
T |
|
| Q |
108 |
ccttcctttcttctttgatcacccttcacaagaaatggtgcccaataggatgtcaagtttgcattgtaagaaggaaaataccacctcccaata-gagcct |
206 |
Q |
| |
|
|| ||| ||||| |||||| | |||||||||||| | |||||| | || ||||||||| ||||||||||| ||||| ||| || ||| |
|
|
| T |
15262443 |
ccggattttgatctttcatcaccttgcacaagaaatggcgaccaatacacagataatgttgcattgtgagaaggaaaatgccacc----aatgtgaacct |
15262348 |
T |
|
| Q |
207 |
atatgattgatatatttaggttttgaaacagtggataataagcaaataagggactctagttggttcctagataaagagtctccaacaaaaactatgttca |
306 |
Q |
| |
|
|||| | || | |||||||||||||||||| ||||| | ||||| ||| ||||| | |||||| |||| |||||| |||||||||||| ||||| |
|
|
| T |
15262347 |
ttatggtggacaggtttaggttttgaaacagttgataacatgcaaagaagagactcaaattggtttctagctaaagaatctccaacaaaagatatgtgtc |
15262248 |
T |
|
| Q |
307 |
tgttgctcatgagtttaagaaaagtgtttgggtcaaaaattggaagatcacactcatttggtttccatctccaatataggtagcttgtgtcaggtcttcc |
406 |
Q |
| |
|
|||| | | |||| |||||||||||||| ||||| ||||||| | |||||||||||||||||||| | || |||||| ||| |||||||||||| |
|
|
| T |
15262247 |
tgtttttgcttagttggagaaaagtgtttggttcaaaccttggaagtttgcactcatttggtttccatctatagtaaaggtagtttgagtcaggtcttcc |
15262148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 222 - 382
Target Start/End: Original strand, 15288097 - 15288257
Alignment:
| Q |
222 |
ttaggttttgaaacagtggataataagcaaataagggactctagttggttcctagataaagagtctccaacaaaaactatgttcatgttgctcatgagtt |
321 |
Q |
| |
|
|||||| ||||| ||| ||||| | ||||| ||| ||||||| ||||||||||| ||||| |||||||||||| |||| | |||| | ||||| | |
|
|
| T |
15288097 |
ttaggtgttgaagtagtcgataacatgcaaagaagtgactctaattggttcctagccaaagaatctccaacaaaagctatatgtttgttcttaatgagat |
15288196 |
T |
|
| Q |
322 |
taagaaaagtgtttgggtcaaaaattggaagatcacactcatttggtttccatctccaata |
382 |
Q |
| |
|
| || ||||||||||| ||||| |||| |||| ||||||| |||| |||||||||||||| |
|
|
| T |
15288197 |
tgaggaaagtgtttggttcaaaccttggtagattacactcacttggcttccatctccaata |
15288257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 15287898 - 15287968
Alignment:
| Q |
32 |
aatcaagtccatttgatctatatcctttgcccaattctcacttacatgatccaaatgtattgtattataat |
102 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| ||||| | ||| |||||||| ||||||||||||| |
|
|
| T |
15287898 |
aatcatgtccatttgatcaatatcctttgcccacctctcattgacaagatccaaaaacattgtattataat |
15287968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 11870 times since January 2019
Visitors: 8661