View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9311-LTR4-TNT-insertion-15 (Length: 705)
Name: F9311-LTR4-TNT-insertion-15
Description: F9311-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9311-LTR4-TNT-insertion-15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 695
Target Start/End: Complemental strand, 13049057 - 13048370
Alignment:
| Q |
8 |
cttacctgttgatacatattatttcatatatagtggtaaaacgagggtttgtcttttggcaaactaatagtgacttctaactgttttgtatgattgaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13049057 |
cttacctgttgatacatattatttcatatatagtggtaaaacgagggtttgtcttttggcaaactaatagtgacttctaactgttttgtatgattgaatt |
13048958 |
T |
|
| Q |
108 |
ctaaataaagctttcattttaggggtatctttcaattctcactttgttaccaggtgccacattataggggccctctttctgctaccatcaaatatagcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13048957 |
ctaaataaagctttcattttaggggtatctttcaattctcactttgttaccaggtgccacattataggggccctctttctgctaccatcaaatatagcta |
13048858 |
T |
|
| Q |
208 |
gattcccatgcacctggaataactatgtatacatgcattcacacaatctcatccgttcaatctcaattctatacaacnnnnnnngtgatatagtggctga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13048857 |
gattcccatgcacctggaataactatgtatacatgcattcacacaatctcatccgttcaatctcaattctatacaacaaaaaaagtgatatagtggctga |
13048758 |
T |
|
| Q |
308 |
tttagcgaccaacttaaagaccaaaaatgtcaannnnnnngctaatattagtagtagtgttttggcgatatttttcacactggtctctaaatcgaccaca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13048757 |
tttagcgaccaacttaaagaccaaaaatgtcaatttttttgctaatattagtagtagtgttttggcgatatttttcacactggtctctaaatcgaccaca |
13048658 |
T |
|
| Q |
408 |
aactcatttaactatcgatttagaaactagtttagcgattgatttggattcaatcgctaaatcggttgttagagacactaaaaaattttggttactaaga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13048657 |
aactcatttaactatcgatttagaaactagtttagcgattgatttggattcaatcgctaaatcggttgttagagacactaaaaaattttggttactaaga |
13048558 |
T |
|
| Q |
508 |
ttgttgctaaatagcaaatttttagttttgattagacaattcattcttattctaatatcacaaaacaagtctaaaatacaaagttaaaacatcgacggtt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13048557 |
ttgttgctaaatagcaaatttttagttttgattagacaattcattcttattctaatatcacaaaacaagtctaaaatacaaagttaaaacatcgacggtt |
13048458 |
T |
|
| Q |
608 |
taatcaagatcaaatgatttccttaattaaatatggttcaaatccccttttgagnnnnnnnnnnnggttttgaaacagcaatatatta |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13048457 |
taatcaagatcaaatgatttccttaattaaatatggttcaaatccccttttgagtttttttttttggttttgaaacagcaatatatta |
13048370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9423 times since January 2019
Visitors: 6804