View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9311-LTR4-TNT-insertion-3 (Length: 511)
Name: F9311-LTR4-TNT-insertion-3
Description: F9311-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9311-LTR4-TNT-insertion-3 |
 | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 10 - 501
Target Start/End: Original strand, 13878074 - 13878565
Alignment:
| Q |
10 |
atataggaggctggatgtgggggtacaaaatggacctctctagtggtagggttccaaagaattaagcttagggtataatcataatcatattccaaacata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13878074 |
atataggaggctggatgtgggggtacaaaatggacctctctagtggtagggttccaaagaattaagcttagggtataatcataatcatattccaaacata |
13878173 |
T |
|
| Q |
110 |
aaataccattacaatgaccgtatattttgattattcgtatggggatgtttttcggaaagagggatttgatgaggttgggtgttggtgttgggtgttgagg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13878174 |
aaataccattacaatgaccgtatattttgattattcgtatggggatgtttttcggaaagagggatttgatgaggttgggtgttggtgttgggtgttgagg |
13878273 |
T |
|
| Q |
210 |
taaagagagaagcattaggtgggtttctaggcaagttgattcaatgggcttgtcaaagatcctgtcattgtggttatgggttttagggcatgtttctttt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13878274 |
taaagagagaagcattaggtgggtttctaggcaagttgattcaatgggcttgtcaaagatcctgtcattgtggttatgggttttagggcatgtttctttt |
13878373 |
T |
|
| Q |
310 |
gtatactgtttaatgataacgaaacgatggtggtcatcatcatcattagacatatggatatgcatgttcctaataacaaatttagggttcttgaaaagaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13878374 |
gtatactgtttaatgataacgaaacgatggtggtcatcatcatcattagacatatggatatgcatgttcctaataacaaatttagggttcttgaaaagaa |
13878473 |
T |
|
| Q |
410 |
tgttccaagatctttgaacacatttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatctccccctagaatt |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13878474 |
tgttccaagatctttgaacacatttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatctccccctagaatt |
13878565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 19071467 - 19071410
Alignment:
| Q |
431 |
atttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatc |
488 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19071467 |
atttaaaacgcataagtgactttgcaggaaatctaactaatatctctgcctccaaatc |
19071410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 19119357 - 19119300
Alignment:
| Q |
431 |
atttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatc |
488 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19119357 |
atttaaaacgcataagtgactttgcaggaaatctaactaatatctctgcctccaaatc |
19119300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 59015 - 58953
Alignment:
| Q |
431 |
atttaaaacgcataagtgacttt-----gcaggcaatctaactaatatctctgcctccaaatc |
488 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
59015 |
atttaaaacgcataagtgactttcacttgcaggcaatctaactaatatctcttcctccaaatc |
58953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 21802924 - 21802987
Alignment:
| Q |
431 |
atttaaaacgcataagtgactttgc------aggcaatctaactaatatctctgcctccaaatc |
488 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |
|
|
| T |
21802924 |
atttaaaacgcataagtgactttgcacttgcaggcaatccaactaatatctcttcctccaaatc |
21802987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 34169256 - 34169207
Alignment:
| Q |
400 |
ttgaaaagaatgttccaagatctttgaacacatttaaaacgcataagtga |
449 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||||| |||||||| ||||| |
|
|
| T |
34169256 |
ttgaatagaatgttccaagatcgttgaacgcatttgaaacgcattagtga |
34169207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1133 times since January 2019
Visitors: 8167