View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9311-LTR4-TNT-insertion-5 (Length: 403)
Name: F9311-LTR4-TNT-insertion-5
Description: F9311-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9311-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 14158236 - 14158619
Alignment:
| Q |
10 |
gtctccttgccttgtaagtgaaccgaacttttaaacctaacagaagattttcaacttcttccttatgcttctcaaaatcatcttctactttgaaatcttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14158236 |
gtctccttgccttgtaagtgaaccgaacttttaaacctaacagaagattttcaacttcttccttatgcttctcaaaatcatcttctactttgaaatcttt |
14158335 |
T |
|
| Q |
110 |
gattttattagagatgtaactcagtaatgtttggccatcttttcttctacgaactgctctttccatggtggtgatcaagacaagaaatggtggtggtgat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14158336 |
gattttattagagatgtaactcagtaatgtttggccatcttttcttctacgaactgctctttccatggtggtgatcaagacaagaaatggtggtggtgat |
14158435 |
T |
|
| Q |
210 |
gagtacagcagataatgaaaatggtgnnnnnnnnnnnnnnnnnnaaaacatggtttcaaaaaccttaaatatttgaaatgtgtatctgtccctagaaata |
309 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14158436 |
gagtacagcagataatgaaaatggtgagaagagaagaagaagaaaaaacatggtttcaaaaaccttaaatatttgaaatgtgtatctgtccctagaaata |
14158535 |
T |
|
| Q |
310 |
gaaactgcatgctttgcagcttccaaaggagacaaaacatgagaacggaaataaggtcaatttcagcttatgtaacccatatta |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14158536 |
gaaactgcatgctttgcagcttccaaaggagacaaaacatgagaacggaaataaggtcaatttcagcttatgtaacccatatta |
14158619 |
T |
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