View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9311-LTR4-TNT-insertion-6 (Length: 315)
Name: F9311-LTR4-TNT-insertion-6
Description: F9311-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9311-LTR4-TNT-insertion-6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 36569294 - 36568999
Alignment:
| Q |
10 |
accgtgacgtcgcggtttggtcacctatactatacggcgcggctgttccggtttcgccttacttgtcggagattctaaggcaagatcaaacttcaggagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36569294 |
accgtgacgtcgcggtttggtcacctatactatacggcgcggctgttccggtttcgccttacttgtcggagattctaaggcaagatcaaacttcaggagg |
36569195 |
T |
|
| Q |
110 |
agtgttggtcaacgttaaagtcaacggtagggttaagtggaaagtagggacttgggtttctggaaggtaccatattgatgtgaactgtccggcgtttata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36569194 |
agtgttggtcaacgttaaagtcaacggtagggttaagtggaaagtagggacttgggtttctggaaggtaccatattgatgtgaactgtccggcgtttata |
36569095 |
T |
|
| Q |
210 |
aaggtcgccggtgataagggtgatgatgggttcggagtttctgctccggcggtgaagtttcagtttttgcaaagttgtgttgttgatgtttaatta |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36569094 |
aaggtcgccggtgataagggtgatgatgggttcggagtttctgctccggcggtgaagtttcagtttttgcaaagttgtgttgttgatgtttaatta |
36568999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 18770148 - 18770197
Alignment:
| Q |
252 |
gctccggcggtgaagtttcagtttttgcaaagttgtgttgttgatgttta |
301 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
18770148 |
gctccggcggttaagtttcagcttttgcaaaattgtcatgttgatgttta |
18770197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1395 times since January 2019
Visitors: 5509