View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9311-LTR4-TNT-insertion-8 (Length: 269)
Name: F9311-LTR4-TNT-insertion-8
Description: F9311-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9311-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 1228829 - 1229077
Alignment:
| Q |
11 |
caaacgtaaacgtaaaagcattccaagaaactcacctccacaaagaagctcagtttataggggtgtcacaaggttaattaattaatcaaattttgatgtt |
110 |
Q |
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| T |
1228829 |
caaacgtaaacgtaaaagcattccaagaaactcacctccacaaagaagctcagtttataggggtgtcacaaggttaattaattaatcaaattttgatgtt |
1228928 |
T |
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| Q |
111 |
tttcattttgatctttatgtttttgtgtcctctaaaattgataatattgttttagacatcgttggaccggtcgatatgaagctcatttgtgggataagaa |
210 |
Q |
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| T |
1228929 |
tttcattttgatctttatgtttttgtgtcctctaaaattgataatattgttttagacatcgttggaccggtcgatatgaagctcatttgtgggataagaa |
1229028 |
T |
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| Q |
211 |
ttgctggaatgaatcacaaagcaagaaaggaagacaaggtgatttaatt |
259 |
Q |
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| T |
1229029 |
ttgctggaatgaatcacaaagcaagaaaggaagacaaggtgatttaatt |
1229077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 54267042 - 54267127
Alignment:
| Q |
170 |
cgttggaccggtcgatatgaagctcatttgtgggataagaattgctggaatgaatcacaaagcaagaaaggaagacaaggtgattt |
255 |
Q |
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| T |
54267042 |
cgttggacaggccgatatgaagctcatttgtgggacaagaattgttggaatgagtctcagaacaagaaagggagacaaggtaattt |
54267127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 25049790 - 25049855
Alignment:
| Q |
185 |
tatgaagctcatttgtgggataagaattgctggaatgaatcacaaagcaagaaaggaagacaaggt |
250 |
Q |
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| T |
25049790 |
tatgaagctcatttgtgggacaagaattgttggaatgaatcgcaaaacaaaaaaggacgacaaggt |
25049855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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