View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9312-LTR4-TNT-insertion-5 (Length: 275)
Name: F9312-LTR4-TNT-insertion-5
Description: F9312-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9312-LTR4-TNT-insertion-5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 24 - 266
Target Start/End: Complemental strand, 42009721 - 42009479
Alignment:
| Q |
24 |
agacatgaaatacaagtattagagttatggaagccattaattaaagaatttgtttgagagagggatgggaactaaagggaagagtgaaaagtgtaaattg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42009721 |
agacatgaaatacaagtattagagttatggaagccattaattaaagaatttgtttgagagagggatgggaactaaagggaagagtgaaaagtgtaaattg |
42009622 |
T |
|
| Q |
124 |
atgatgaaatgcaaaaaggagtgaagaggggtttgtagttggttgttgtagtatgaaagaatatatgatatgatggagtagaaatggaagtagaactctt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42009621 |
atgatgaaatgcaaaaaggagtgaagaggggtttgtagttggttgttgtagtatgaaagaatatatgatatgatggagtagaaatggaagtagaactctt |
42009522 |
T |
|
| Q |
224 |
caagtcaaaatttaaatgtatatttgtcaacaaaagtcaattg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42009521 |
caagtcaaaatttaaatgtatatttgtcaacaaaagtcaattg |
42009479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 8825 times since January 2019
Visitors: 8217