View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9314-LTR4-TNT-insertion-4 (Length: 132)
Name: F9314-LTR4-TNT-insertion-4
Description: F9314-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9314-LTR4-TNT-insertion-4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 115; Significance: 8e-59; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 8e-59
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 25352226 - 25352112
Alignment:
| Q |
9 |
aaggttacaagaaaattggatttatagaaggtaaggaggactagtaatagattgagaaccttggccttcaaaaaagtatataatggtcctggaagagatg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25352226 |
aaggttacaagaaaattggatttatagaaggtaaggaggactagtaatagattgagaaccttggccttcaaaaaagtatataatggtcctggaagagatg |
25352127 |
T |
|
| Q |
109 |
caacctgcccaattg |
123 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25352126 |
caacctgcccaattg |
25352112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 25356892 - 25356794
Alignment:
| Q |
12 |
gttacaagaaaattggatttatagaaggtaaggaggactagtaatagattgagaaccttggccttcaaaaaagtatataatggtcctggaagagatgca |
110 |
Q |
| |
|
||||||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| |
|
|
| T |
25356892 |
gttacaagaaagttggatttaaaggtggtgaggaggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggtcctgggaaagatgca |
25356794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 25349676 - 25349585
Alignment:
| Q |
20 |
aaaattggatttatagaaggtaaggaggactagtaatagattgagaaccttggccttcaaaaaagtatataatggtcctggaagagatgcaac |
112 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
25349676 |
aaaattggatttaaagatggtgaggaggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggt-ctgggagagatgcaac |
25349585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 25361555 - 25361462
Alignment:
| Q |
15 |
acaagaaaattggatttatagaaggtaaggaggactagtaatagattgagaaccttggccttcaaaaaagtatataatggtcctggaagagatgcaa |
111 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| ||||| ||||||||||||||||| ||||||||| | |||| |||||||||| |||||||||| |
|
|
| T |
25361555 |
acaagaaaattgaatttaaagaaggtaagga---ctagtgatagattgagaaccttgaccttcaaaagatcatatgatggtcctgggagagatgcaa |
25361462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9860 times since January 2019
Visitors: 8623