View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9314-LTR4-TNT-insertion-9 (Length: 159)
Name: F9314-LTR4-TNT-insertion-9
Description: F9314-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9314-LTR4-TNT-insertion-9 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 8e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 8e-75
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 55162464 - 55162605
Alignment:
| Q |
8 |
acaatttcagaccaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatggg |
107 |
Q |
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| T |
55162464 |
acaatttcagaccaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatggg |
55162563 |
T |
|
| Q |
108 |
ttcttaaccttacaggtacacagttaagatctgctgtgaatt |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162564 |
ttcttaaccttacaggtacacagttaagatctgctgtgaatt |
55162605 |
T |
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