View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9315-LTR4-TNT-insertion-10 (Length: 269)
Name: F9315-LTR4-TNT-insertion-10
Description: F9315-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9315-LTR4-TNT-insertion-10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 36 - 260
Target Start/End: Complemental strand, 22765084 - 22764859
Alignment:
| Q |
36 |
tggtgccgaatgaaaaacggttcctaccaagaaactttaagcttaagaaagattttttgattnnnnnnnncgctgacccacttcaaaaa-cgtggtcttt |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
22765084 |
tggtgccaaatgaaaaacggttcctaccaagaaactttaagcttaagaaagattttttgattaaaaaaaacgctgacccacttcaaaaaacgtggtcttt |
22764985 |
T |
|
| Q |
135 |
tatgaatttaaaacaaatccatcacaagaatcttgatattaaaaagaaaaatcaaagcatttaagaaaatgaagcattgcaatgaacataattaacaaag |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22764984 |
tatgaatttaaaacaaatccatcacaagaatcttgatattaaaaagaaaaatcaaagcatttaagaaaatgaagcattgcaatgaacataattaacaaag |
22764885 |
T |
|
| Q |
235 |
aatgtgttgcataacaatatcaattg |
260 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
22764884 |
aatgtgttgcataacaatatcaattg |
22764859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 159 - 260
Target Start/End: Complemental strand, 22769738 - 22769637
Alignment:
| Q |
159 |
caagaatcttgatattaaaaagaaaaatcaaagcatttaagaaaatgaagcattgcaatgaacataattaacaaagaatgtgttgcataacaatatcaat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22769738 |
caagaatcttgatattaaaaagaaaaatcaaagcatttaagaaaatgaagcattgcaatgaacataattaacaaagaatgtgttgcataacaatatcaat |
22769639 |
T |
|
| Q |
259 |
tg |
260 |
Q |
| |
|
|| |
|
|
| T |
22769638 |
tg |
22769637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1954 times since January 2019
Visitors: 4012