View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9315-LTR4-TNT-insertion-8 (Length: 511)
Name: F9315-LTR4-TNT-insertion-8
Description: F9315-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9315-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 9 - 501
Target Start/End: Complemental strand, 44849755 - 44849263
Alignment:
| Q |
9 |
ctgccacctcataccattagtccctgaattactgccatttgtagcagactctgcaaactcatataacccacgatataaagcaaacccgggatataactcc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44849755 |
ctgccacctcataccattagtccctgaattactgccatttgtagcagactctgcaaactcatataacccacgatataaagcaaacccgggatataactcc |
44849656 |
T |
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| Q |
109 |
atacaaatgatccattctcctgcagaaatagcgcaggaaatcaacacgttagaaggtaagaagttgacaaagaggcatgtgatacatataaagatgctga |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44849655 |
atacaaatgatccattctcctgcagaaatagcgcaggaaatcaacacgttagaaggtaagaagctgacaaagaggcatgtgatacatataaagatgctga |
44849556 |
T |
|
| Q |
209 |
tatgtggtctatgtagataaaacttctaatcatttttatcatatcatatcattccattttttacagtttgtagagaatcaaataatttctgatttgtaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44849555 |
tatgtggtctatgtagataaaacttctaatcatttttatcatatcatatcattccattttttacagtttgtagagaatcaaataatttctgatttgtaaa |
44849456 |
T |
|
| Q |
309 |
tgaaaactgataagctatacatgcttaattgcaaactttgtattataagcacagaacattcaagatcctttggtgtttttgaatcttcatagtgatggtc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44849455 |
tgaaaactgataagctatacatgcttaattgcaaactttgtattataagcacagaacattcaagatcttttggtgtttttgaatcttcatagtgatggtc |
44849356 |
T |
|
| Q |
409 |
atcctctttctctatttccttgtcctcatcctcttgtttctattgccttacccatttaaggcgaggactacttaaatcttatatctctaatta |
501 |
Q |
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| T |
44849355 |
atcctctttctctatttccttgtcctcatcctcttgtttctattgccttacccatttaaggcgaggactacttaaatcttatatctctaatta |
44849263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 51 - 242
Target Start/End: Complemental strand, 44863968 - 44863776
Alignment:
| Q |
51 |
agcagactctgcaaactcatataacccacgatataaagcaaacccgggatataactccatacaaatgatccattctcctgcagaaatagcgcaggaaatc |
150 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| || ||||| |
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| T |
44863968 |
agcagactgtgcaaattcatataacccacgatataaagaaaacccgggatacaactccatacaaatgatccatcctcctgcagaaatagcatagaaaatc |
44863869 |
T |
|
| Q |
151 |
aacacgttagaaggtaagaagttgacaaagaggcatgtgatacatataaagatg-ctgatatgtggtctatgtagataaaacttctaatcatt |
242 |
Q |
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|||| | |||||||| |||| || |||||||||||||||||||| |||| ||| |||||||| | |||||||| | |||||| ||||||||| |
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| T |
44863868 |
aacatgctagaaggttagaaactgtcaaagaggcatgtgatacatctaaaaatgactgatatgagatctatgtaaaaaaaactactaatcatt |
44863776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 44881858 - 44881675
Alignment:
| Q |
62 |
caaactcatataacccacgatataaagcaaacccgggatataactccatacaaatgatccattctcctgcagaaatagcgcaggaaatcaacacgttaga |
161 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||| |
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| T |
44881858 |
caaactcatacaacccacgatataaagcaaacccaggatacaactccatacaaatgatccatcctcctgcagaaatagcataggaaataaacacactaga |
44881759 |
T |
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| Q |
162 |
aggtaagaagtt-gacaaaga-ggcatgtgatacatataaagatg-ctgatatgtggtctatgtagataaaacttctaatcatt |
242 |
Q |
| |
|
|||| ||||||| || | ||| |||||| ||||||| |||| ||| |||||||| | ||| |||| |||||||| ||||||||| |
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| T |
44881758 |
aggttagaagttggaaatagagggcatgcgatacatctaaaaatgactgatatgagatctgtgtaaataaaactcctaatcatt |
44881675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 44837899 - 44837796
Alignment:
| Q |
60 |
tgcaaactcatataacccacgatataaagcaaacccgggatataactccatacaaatgatccattctcctgcagaaatagcgcaggaaatcaacacgtta |
159 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||| | || |
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| T |
44837899 |
tgcaaactcatacaacccacgatataaagcaaacccaggatacaattccatacaaatgatccagcctcctgcagaaatagcgtaggaaatcaacaggcta |
44837800 |
T |
|
| Q |
160 |
gaag |
163 |
Q |
| |
|
|||| |
|
|
| T |
44837799 |
gaag |
44837796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 44898224 - 44898096
Alignment:
| Q |
9 |
ctgccacctcataccattagtccctgaattactgccatttgtagcagactctgcaaactcatataacccacgatataaagcaaacccgggatataactcc |
108 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||| | || ||||||| | |||||||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
44898224 |
ctgccaccgcataccaacagtccccatattactgccgctggtggcagactgtccaaactcatacaacccacgatataaagcaaatccgggatacaactcc |
44898125 |
T |
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| Q |
109 |
atacaaatgatccattctcctgcagaaat |
137 |
Q |
| |
|
||||||||||||||| |||||||| |||| |
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| T |
44898124 |
atacaaatgatccatcctcctgcataaat |
44898096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 12926730 - 12926785
Alignment:
| Q |
67 |
tcatataacccacgatataaagcaaacccgggatataactccatacaaatgatcca |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
12926730 |
tcatataacccacgatataaagcaaacccaggatataactccataacaatgatcca |
12926785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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