View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9315-LTR4-TNT-insertion-9 (Length: 340)
Name: F9315-LTR4-TNT-insertion-9
Description: F9315-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9315-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 4244844 - 4245165
Alignment:
| Q |
9 |
gttttactttgagtggaaaaaaggctagctcgaataacttgaaagtcgggccttctttgacgccatcgtcccaatttgctgctccagccggtgttatctc |
108 |
Q |
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| T |
4244844 |
gttttactttgagtggaaaaaaggctagctcgaataacttgaaagtcgggccttctttgacgccatcgtcccaatttgctgctccagccggtgttatctc |
4244943 |
T |
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| Q |
109 |
tcaagggccttcatttggttcctctagtggcaatgagactagtccttttagtcaggggtccggaatctacaataatgctaatcagctcattccaactata |
208 |
Q |
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| T |
4244944 |
tcaagggccttcatttggttcctctagtggcaatgagactagtccttttagtcaggggtccggaatctacaataatgctaatcagctcattccaactata |
4245043 |
T |
|
| Q |
209 |
tcgatgtaccagagactgttggctcgccaagttcaattgtaaggatgagcttttaagattaccagtgcagtagcaggttgtttgcatgacatttgttcaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4245044 |
tcgatgtaccagagactgttggctcgccaagttcaattgtaaggatgagcttttaagattaccagtgcagtagcaggttgtttgcatgacatttgttcaa |
4245143 |
T |
|
| Q |
309 |
agttgtggttgctggttgaatt |
330 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
4245144 |
agttgtggttgctggtcgaatt |
4245165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 3409793 - 3409605
Alignment:
| Q |
9 |
gttttactttgagtggaaaaaaggctagctcgaataacttgaaagtcgggccttctttgacgccatcgtcccaatttgctg---------ctccagccgg |
99 |
Q |
| |
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||||||||||| || || |||||||||||||||||||||||| | |||||||||| ||||||||||||| |||||| ||||| ||| |
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| T |
3409793 |
gttttactttggatgttaagaaggctagctcgaataacttgaaaattgggccttcttcagtgccatcgtcccaaattgctgcttctgggactccaatcgg |
3409694 |
T |
|
| Q |
100 |
tgttatctctcaagggccttcatttggttcctctagtggcaatgagactagtccttttagtcaggggtccggaatctacaataatgcta |
188 |
Q |
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|| || | |||||||||||||| || |||||| ||| |||| ||| |||||||||||||||| || |||| |||||||||||||| |
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| T |
3409693 |
tgctacccttcaagggccttcatatgagtcctctggtgacaatcagaatagtccttttagtcagaggcttggaagctacaataatgcta |
3409605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 330
Target Start/End: Original strand, 4251528 - 4251563
Alignment:
| Q |
295 |
tgacatttgttcaaagttgtggttgctggttgaatt |
330 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
4251528 |
tgacatttgttcaaagttgtggttgcaggttgaatt |
4251563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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