View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9321-LTR4-TNT-insertion-2 (Length: 405)
Name: F9321-LTR4-TNT-insertion-2
Description: F9321-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9321-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 10980907 - 10981296
Alignment:
| Q |
8 |
gtgtggatccatcaaattcagcgacatcaacaactgaaaccacattctcagctgctctctttcccaaggagtttggagtgttcgaagtcacaactggagc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10980907 |
gtgtggatccatcaaattcagcgacatcaacaactgaaaccacattctcagctgctctctttcccaaggagtttggagtgttcgaagtcacaactggagc |
10981006 |
T |
|
| Q |
108 |
aactgcatctacctttgaagcagacaccaattttggttcttttgtgctcgatgcttcacacccacctacatcaatgtcatccaaagacttgctaatcggt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10981007 |
aactgcatctacctttgaagcagacaccaattttggttcttttgtgctcgatgcttcacacccacctacatcaatgtcatccaaagacttgctaatcggt |
10981106 |
T |
|
| Q |
208 |
gttacatctgaatcggctacaccaactttgtccttgttatcggaatcaactccttcaatagttagaacaaactttgaatgatataaatggttagaacaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10981107 |
gttacatctgaatcggctacaccaactttgtccttgttatcggaatcaactccttcaatagttagaacaaactttgaaagatataaatggttagaacaaa |
10981206 |
T |
|
| Q |
308 |
ctgatttgaataaactatagttaacacaaataactatagtagttgcaaagaatacaatcaaacaaagaattcaaattagtagttgcaatt |
397 |
Q |
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| T |
10981207 |
ctgatttgaataaactatagttaacacaaataactatagtagttgcaaagaatacaatcaaacaaagaattcaaattagtagttgcaatt |
10981296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 22617663 - 22617755
Alignment:
| Q |
104 |
gagcaactgcatctacctttgaagcagacaccaattttggttcttttgtgctcgatgcttcacacccacctacatcaatgtcatccaaagact |
196 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
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| T |
22617663 |
gagcaactgcagctacctttgaagcagacaccatttttggttcttttgtgctcgatgcttcacatccacccacatcaatgtcatccaacgact |
22617755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 22617782 - 22617862
Alignment:
| Q |
190 |
aaagacttgctaatcggtgttacatctgaatcggctacaccaactttgtccttgttatcggaatcaactccttcaatagtt |
270 |
Q |
| |
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||||||||||||||| ||||||||||||| | |||| | |||||| ||||| |||| |||||||||||||||||||||| |
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| T |
22617782 |
aaagacttgctaatcattgttacatctgaagcagctagagcaacttcttccttattattggaatcaactccttcaatagtt |
22617862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 42933529 - 42933488
Alignment:
| Q |
356 |
agaatacaatcaaacaaagaattcaaattagtagttgcaatt |
397 |
Q |
| |
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||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
42933529 |
agaatacaatcgaacaaagaattctaattagcagttgcaatt |
42933488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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