View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-1-13 (Length: 672)
Name: J5-1-13
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-1-13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 41 - 672
Target Start/End: Complemental strand, 54201709 - 54201078
Alignment:
| Q |
41 |
attaatattgtgtaaatacaaatcctttgaattagccaactaaaaattgaaatttgcgtctcatttatagtatctatagtcgattttaaagtgtagtcag |
140 |
Q |
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| T |
54201709 |
attaatattgtgtaaatacaaatcctttgaattagccaactaaaaattgaaatttgcgtctcatttatagtatctatagtcgattttaaagtgtagtcag |
54201610 |
T |
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| Q |
141 |
ttgttagccgttaaattaagagagatatttttctcttgacagcctgcaaccggctgcaccataaagccgtttgtcgaggatctaacttcctcaaaaataa |
240 |
Q |
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| T |
54201609 |
ttgttagccgttaaattaagagagatatttttctcttgacagcctgcaaccggctgcaccataaagccgtttgtcgaggatctaacttcctcaaaaataa |
54201510 |
T |
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| Q |
241 |
acatgtcgcctaatttataagctagctacttacccaagtccacaagaaataggctatttggaaagcattctgcaaaagaataatgnnnnnnntatattat |
340 |
Q |
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| T |
54201509 |
acatgtcgcctaatttataagctagctacttacccaagtccacaagaaataggctatttggaaagcattctgcaaaagaataatgaaaaaaatatattat |
54201410 |
T |
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| Q |
341 |
gagtaagttctgattgatcaagattgaactaaaatcaaagcatcttacacaatgttatgtgatatatactaacatcacaacaaatgatctattataaaat |
440 |
Q |
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| T |
54201409 |
gagtaagttctgattgatcaagattgaactaaaatcaaagcatcttacacaatgttatgtgatatatactaacatcacaacaaatgatctattataaaat |
54201310 |
T |
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| Q |
441 |
gtgtatttacctggaataaggtaaaatgaatcaagaagatgatccaatgggggcgattaaaccaaaaatacttgttgttgggctctaccacgggcacacc |
540 |
Q |
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| T |
54201309 |
gtgtatttacctggaataaggtaaaatgaatcaagaagatgatccaatgggggcgattaaaccaaaaatacttgttgttgggctctaccacgggcacacc |
54201210 |
T |
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| Q |
541 |
tcttacaattgtagtacgatcttggatttcttgagccatttccatgattatcagttcaagctttgtgcccactaataaaagtatctgtaaaagttgataa |
640 |
Q |
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| T |
54201209 |
tcttacaattgtagtacgatcttggatttcttgagccatttccatgattatcagttcaagctttgtgcccactaataaaagtatctgtaaaagttgataa |
54201110 |
T |
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| Q |
641 |
acacagattttgaattgtaaacaccagtatta |
672 |
Q |
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| T |
54201109 |
acacagattttgaattgtaaacaccagtatta |
54201078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 54201082 - 54201036
Alignment:
| Q |
1 |
tattatgctgatcatgttcatgtgcctaattataaaatccattaata |
47 |
Q |
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| T |
54201082 |
tattatgctgatcatgttcatgtgcctaattataaaatccattaata |
54201036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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