View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-1-2 (Length: 222)
Name: J5-1-2
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-1-2 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 38785588 - 38785455
Alignment:
| Q |
1 |
ccatggtcctttttcatattattcatgtagtgcaatatattatgctccaacgaagggtgatatttaggatgcaaagtgtaaaacttgtgtcggagggtgt |
100 |
Q |
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| T |
38785588 |
ccatggtcctttttcatattattcatgtagtgcaatatattatgctccaacgaagggtgatatttaggatgcaaagtgtaaaacttgtgtcggagggtgt |
38785489 |
T |
|
| Q |
101 |
ttttacataattgtaggacgcgcgagaaattaat |
134 |
Q |
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| T |
38785488 |
ttttacataattgtaggacgcgcgagaaattaat |
38785455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 38785680 - 38785584
Alignment:
| Q |
126 |
gaaattaatggaagagaaactatcttaattttgaagtgtgtggttacttaggttacttttagagacatagttacacgaaggactattgaaagccatg |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38785680 |
gaaattaatggaagagaaactatcttaattttgaagtgtgtggttacttaggttacttttagagacatagttacacgaaggactattgaaagccatg |
38785584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 38782068 - 38782033
Alignment:
| Q |
125 |
agaaattaatggaagagaaactatcttaattttgaa |
160 |
Q |
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| T |
38782068 |
agaaattaatggaagagaaactatcttagttttgaa |
38782033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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