View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-1-34 (Length: 430)
Name: J5-1-34
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-1-34 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 26297917 - 26297491
Alignment:
| Q |
1 |
cagtttcgcagttgcaagtcttaaagaatcagtagaaaccaaatcaacaggattaccaacacaagctcttcttttagaaatagttttcaaaccagaaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26297917 |
cagtttcgcagttgcaagtcttaaagaatcagtagaaaccaaatcaacaggattaccaacacaagctcttcttttagaaatagttttcaaaccagaaact |
26297818 |
T |
|
| Q |
101 |
cttggaacggaagaggaagcatcgttatcaaagcgagtgacgtaaacgaactgaccgagctggagtttatcagaacggattaactcggcgtcggagtcgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26297817 |
cttggaacggaagaggaagcatcgttatcaaagcgagtgacgtaaacgaactgaccgagctggagtttatcagaacggattaactcggcgtcggagtcgg |
26297718 |
T |
|
| Q |
201 |
agacggagacataagcggagtgaagagagtcggagagtttgagaaagtagccggtggcgggctgaaatgtgtcttctgaaagacgagggatgatttcagt |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26297717 |
agacggagacataagcggagtgaagagagtcggagagtttgagaaagtagccggtggcgggttgaaatgtgtcttctgaaagacgagggatgatttcagt |
26297618 |
T |
|
| Q |
301 |
tacttgaaggagtggttgacggtgggtgtttgttgaagtggagttttggagaagttttgggaggactccaggggttagagacgccattgttgtaaggaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26297617 |
tacttgaaggagtggttgacggtgggtgtttgttgaagtggagttttggagaagttttgagaggactccaggggttagagacgccattgttgtaaggaat |
26297518 |
T |
|
| Q |
401 |
agctctttttgaaatggctgcctcccc |
427 |
Q |
| |
|
||||||||||||||||||||| ||||| |
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|
| T |
26297517 |
agctctttttgaaatggctgcttcccc |
26297491 |
T |
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