View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-1-5 (Length: 202)
Name: J5-1-5
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-1-5 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 41228415 - 41228542
Alignment:
| Q |
1 |
gtgaaatctcagggttggcatttaaaacaacaatttatcttaattcttgaatctccacttcaatggtatatgtagtttcaatggaaacaaatctgaaatg |
100 |
Q |
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| T |
41228415 |
gtgaaatctcagggttggcatttaaaacaacaatttatcttaattcttgaatctccacttcaatggtatatgtagtttcaatggaaacaaatctgaaatg |
41228514 |
T |
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| Q |
101 |
ataattgatcccaatcctgtatattaat |
128 |
Q |
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| T |
41228515 |
ataattgatcccaatcctgtatattaat |
41228542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 41228340 - 41228401
Alignment:
| Q |
123 |
attaatattgttcacgtcctctctatataaagaaagttatgtttttcttgattatattctga |
184 |
Q |
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| T |
41228340 |
attaatattgttcacgtcctctctatataaagaaagttatgtttttcttgattatattctga |
41228401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 32643517 - 32643633
Alignment:
| Q |
5 |
aatctcagggttggcatttaaaacaacaatttatcttaattcttgaatctccacttcaatggtatatgtagtttcaatggaaacaaatctgaaatgataa |
104 |
Q |
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| T |
32643517 |
aatctcagggttggcatttaaaataacaattcatcttaattc-tgtatctctatttcaatgg--tatgcagttctaatggtaacaactctgaaatgaata |
32643613 |
T |
|
| Q |
105 |
ttgatcccaatcctgtatat |
124 |
Q |
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|||| |||||| ||||||| |
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| T |
32643614 |
ctgattccaatcatgtatat |
32643633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 42783656 - 42783706
Alignment:
| Q |
123 |
attaatattgttcacgtcctctctatataaagaaagttatgtttttcttga |
173 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
42783656 |
attaatcttgttcacgtcctctctctataaagaaagttatgtttttgttga |
42783706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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