View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-1-52 (Length: 358)
Name: J5-1-52
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-1-52 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 46258016 - 46258336
Alignment:
| Q |
1 |
ctcttttggctacaaagtgaccccatggcccatgtccatcaaatataccgcaaaatatcatgtcctcttggcatccaaattcctataatttaatacaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46258016 |
ctcttttggctacaaagtgaccccatggcccatgtccatcaaatataccgcaaaatatcatgtcctcttggcatccaaattcctataatttaatacaata |
46258115 |
T |
|
| Q |
101 |
gataggaccacaatgatgcagatggttaaccaccagaattgaattttatatcaaagacaaataaaatggttgattataaataggaccaaaaatgtaacaa |
200 |
Q |
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| T |
46258116 |
gataggaccacaatgatgcagatggttaaccaccagaattgaattttatatcaaagacaaataaaatggttgattataaataggaccaaaaatgtaacaa |
46258215 |
T |
|
| Q |
201 |
gtacatgtttgtatacatgttgcgtttgacagaatcactgtcatgattttgacaaaagctacactttgaaggttaaacaaactcacggtgtcaccttgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46258216 |
gtacatgtttgtatacatgttgcgtttgacagaatcactgtcatgattttgacaaaagctacactttgaaggttaaacaaactcacggtgtcaccttgat |
46258315 |
T |
|
| Q |
301 |
ttcgtcaaaactcccggaatt |
321 |
Q |
| |
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| T |
46258316 |
ttcgtcaaaactcccggaatt |
46258336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 46257980 - 46258020
Alignment:
| Q |
318 |
aattgcatagcaaagaccttggcattgactctcttactctt |
358 |
Q |
| |
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| T |
46257980 |
aattgcatagcaaagaccttggcattgactctcttactctt |
46258020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 37242161 - 37242087
Alignment:
| Q |
16 |
agtgaccccatggcccatgtccatcaaatataccgcaaaatatcatgtcctcttggcatccaaattcctataatt |
90 |
Q |
| |
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| T |
37242161 |
agtgaccccaaggtccatgtccatcaaaaatcccacagaagatcatgtcctcttggcatccaaattcctataatt |
37242087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 49916873 - 49916791
Alignment:
| Q |
3 |
cttttggctacaaagtgaccccatggcccatgtccatcaaatataccgcaaaatatcatgtcctcttggcatccaaattccta |
85 |
Q |
| |
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|||||||||||||| || ||||| || ||||| |||||||| | || ||||| |||||||| | |||||||||||||||||| |
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| T |
49916873 |
cttttggctacaaaatgtccccaaggaccatgcccatcaaaaactccacaaaacatcatgtcttgttggcatccaaattccta |
49916791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 5413992 - 5413950
Alignment:
| Q |
244 |
tgattttgacaaaagctacactttgaaggttaaacaaactcac |
286 |
Q |
| |
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| T |
5413992 |
tgattttgacaaaagctacactttggagcttcaacaaactcac |
5413950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 6020546 - 6020487
Alignment:
| Q |
246 |
attttgacaaaagctacactttgaaggttaaacaaactcacggtgtcaccttgatttcgtc |
306 |
Q |
| |
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||||||||||||||||||||| || |||| |||| ||||| |||||||||||||||||| |
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| T |
6020546 |
attttgacaaaagctacacttaatagcttaa-caaaatcacgttgtcaccttgatttcgtc |
6020487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 27870915 - 27870975
Alignment:
| Q |
242 |
catgattttgacaaaagctacactttgaaggttaaacaaactcacggtgtcaccttgattt |
302 |
Q |
| |
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|||||||||||||||| |||| ||||| |||| |||||| ||| ||||||||| |||||| |
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| T |
27870915 |
catgattttgacaaaacctactctttgttggttcaacaaaatcatggtgtcaccgtgattt |
27870975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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