View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-1-55 (Length: 596)
Name: J5-1-55
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-1-55 |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 6698551 - 6698169
Alignment:
| Q |
1 |
ccattctctcatacacttcatagtgcttggttttatttcaacattatgtctatgtgtagggtcctacatgatcaagtcttcacacagtaagaatcaatca |
100 |
Q |
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| T |
6698551 |
ccattctctcatacacttcatagtgcttggttttatttcaacattatgtctatgtgtagggtcctacatgatcaagtcttcacacagtaagaatcaatca |
6698452 |
T |
|
| Q |
101 |
aggtcaagtaagaaatgcatcattacaaatttccaatttttggtccttttctagttatgatcgaaactgtttcgttgaggatactcaagaccattcacaa |
200 |
Q |
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| T |
6698451 |
aggtcaagtaagaaatgcatcattacaaatttccaatttttggtccttttctagttatgatcgaaactgtttcgttgaggatactcaagaccattcacaa |
6698352 |
T |
|
| Q |
201 |
gtacttttggtgcagttttttatgcgctgaattatgcaacgccaaagggaacattgggttattgcaaactcaccggacccctcctcctccttcagttaca |
300 |
Q |
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| T |
6698351 |
gtacttttggtgcagttttttatgcgctgaattatgcaacgccaaagggaacattgggttattgcaaactcaccggacccctcctcctccttcagttaca |
6698252 |
T |
|
| Q |
301 |
cagcccaacattaaaattaatgctcactatgccactttccagtgagatatggctccataacaacactaagtttgaaggacaatt |
384 |
Q |
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| T |
6698251 |
cag-ccaacattaaaattaatgctcactatgccactttccagtgagatatggctccataacaacactaagtttgaaggacaatt |
6698169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 397 - 596
Target Start/End: Complemental strand, 6698746 - 6698547
Alignment:
| Q |
397 |
ctctcatgttttctcaagtgtgtatatctctatgcttaaatcatactttttataaaatttctttttctcttttgtaatagaaggtgaagatttcgatgga |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6698746 |
ctctcatgttttctcaagtgtgtatatctctatgcttaaatcatactttttataaaatttctttttctcttttgtaatagaaggtgaagatttcgatgga |
6698647 |
T |
|
| Q |
497 |
ctctcatttaatatgagaggatccattccccctaattggtaatttggtagtatctttctagacacaagctctcaaaaaatcttcaaattgctgaaccatt |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6698646 |
ctctcatttaatatgagaggatccattccccctaattggtaatttggtagtatctttctagacacaagctctcaaaaaatcttcaaattgctgaaccatt |
6698547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 526
Target Start/End: Complemental strand, 45401916 - 45401852
Alignment:
| Q |
462 |
tctcttttgtaatagaaggtgaagatttcgatggactctcatttaatatgagaggatccattccc |
526 |
Q |
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|||||||| ||||||||||||||||||| ||||| | |||| | | |||||||||||||||||| |
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| T |
45401916 |
tctcttttataatagaaggtgaagattttaatggaatatcatatgacatgagaggatccattccc |
45401852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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