View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-1-62 (Length: 712)
Name: J5-1-62
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-1-62 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 63 - 712
Target Start/End: Original strand, 54472152 - 54472799
Alignment:
| Q |
63 |
caattgagcgtgggtggtataatagcagttgcaggtgcagcttgtataatcctccttgtcgttatcctactctgcgttatatgtacaagaaggaagaaga |
162 |
Q |
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| T |
54472152 |
caattgagcgtgggtggtataatagcagttgcaggtgcagcttgtataatcctccttgtcattatcctactctgcgttatatgtacaagaaggaagaaga |
54472251 |
T |
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| Q |
163 |
gatcacaaccncatcacattcattactaccctactccagcacacggtatatatttttatatatctcctatttcnnnnnnnaataggaatttgcaaataag |
262 |
Q |
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| T |
54472252 |
gatcacaacctcatcacattcattactaccctactccagcacacggtatatatttttatatatctcctatttctttttttaataggaatttgcaaataag |
54472351 |
T |
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| Q |
263 |
catgttatgaagtttagaatagttnatgggggaagcnnnnnnnnnnnnnnnnnnnnnnnngattcatagcctattcttannnnnnngatcagaaatggat |
362 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
54472352 |
catgttatgaagtttagaatagttaatgggggaagctaattaattaattaattaattaatgattcatagcctattcttatttttttgatcagaaatggat |
54472451 |
T |
|
| Q |
363 |
cctctaaagcttttgcatgggggccatagtcgacgcggtagaggatccaaatttgaatcttatgtagctacaatatggtgttgcaaatgtagaaactgta |
462 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472452 |
cctctaaagcttttgcatggtg-ccatagtcgacgcggtagaggatccaaatttgaatcttatgtagctacaatatggtgttgcaaatgtagaaactgta |
54472550 |
T |
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| Q |
463 |
agatatnnnnnnnnnntgttatctttgaatttatcantcccctggtcataaaggatctaatttgttcaaatcatttgttaaaaggctagttgtatatgtt |
562 |
Q |
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|||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472551 |
agatataaaaaaaaaatgttatctttgaatttatcaatccc-tggtcataaaggatctaatttgttcaaatcatttgttaaaaggctagttgtatatgtt |
54472649 |
T |
|
| Q |
563 |
gagtatgtgttataatgctaataagtgggagagtcaattaagcgaagcgagagtgacatgcctttttgaaccaacacagttacacgaaggtaagttgcga |
662 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472650 |
gagtatgtgttataatgctaataagtgggagagtcaattaagcgaagcgagagtgacatgcctttttgaaccaacacagttacacgaaggtaagttgcga |
54472749 |
T |
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| Q |
663 |
ggggtgattagggacacgggtttgaagcctgaaccgtaatatataaatac |
712 |
Q |
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| T |
54472750 |
ggggtgattagggacgcgggtttgaagcctgaaccgtaatatataaatac |
54472799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 54472795 - 54472862
Alignment:
| Q |
1 |
aatacaagttgtacaatttaaatcctattcttttaagatgacgatgatagaaaggaactgcacaattg |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472795 |
aatacaagttgtacaatttaaatcctattcttttaagatgacgatgatagaaaggaactgcacaattg |
54472862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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