View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-1-77 (Length: 850)
Name: J5-1-77
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] J5-1-77 |
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[»] scaffold0072 (1 HSPs) |
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[»] scaffold0580 (2 HSPs) |
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[»] scaffold0189 (1 HSPs) |
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[»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 24)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 34359723 - 34360207
Alignment:
Q |
1 |
caatggtatagagctgatggtttgaccgtcttcttgtagtgcatgtgcaagtcttctggaccaaggtgttcacgcggtgtgtcctgatgagagcaagcaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
34359723 |
caatggtatagagctgatggtttgaccgtcttcttgtagtgcatgtgcaagtcttctggaccaaggtgttcacgcggtgtgtcctgatgagagcaagcaa |
34359822 |
T |
|
Q |
101 |
tgacggtgcaagtagatatgaatgaaaaagcttctgtttgaggagaagcgtattcatatgaattgattgactcacacttaagaggaatattatttgtatt |
200 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
34359823 |
tgacggtgcaagtagatatgaatgaaaaagcttctgtttgaggagaagcgtattcatatgaattgattgactcacacttaagaggaatattatttgtatt |
34359922 |
T |
|
Q |
201 |
tcaagagtgagagtctcacatttgatggaaaagttaaaagtggatgttgaacactgcttcctccgtttc-aaatgagngtcactttanctaaaatattta |
299 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |
|
|
T |
34359923 |
tcaagagtgagagtctcacatttgatggaaaagttaaaagtggatgttgaacactgcttcctccgtttcaaaatgagtgtcactttagctaaaatattta |
34360022 |
T |
|
Q |
300 |
tttcaaaatgacgttttcaatacaactttaannnnnnncntccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtt |
399 |
Q |
|
|
|||||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||| ||| ||| |||||| |||||||||| | ||| |
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|
T |
34360023 |
tttcaaaatgacattttcaatacaactttattttttttcttccaactttaccctctccaa-cttttctctcacacaattttcaatgcaacttt--aagtt |
34360119 |
T |
|
Q |
400 |
tgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|||||||||| ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
34360120 |
tgtctttttc-ttataaagtaa-gggcagttta-gtaaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
34360207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 485 - 850
Target Start/End: Original strand, 34359362 - 34359727
Alignment:
Q |
485 |
caattgtctcggaaatgagtgcaaactgctaagtctaaatgccttgaataaattgttttcgtgagttccaaggcaagataggacaatatatgatgtgtag |
584 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
34359362 |
caattgtctcggaaatgagtgcaaactgctaagtctaaatgccttgaataaattgttttcgtgagttccaaggcaagataggacaatatatgatgtgtag |
34359461 |
T |
|
Q |
585 |
cagcatatgacacgagtaatagcttaatggttagatcaagatttaacaaaaatttcacacccgaccaaatgcacattaattttcgtattgggtagtttac |
684 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
34359462 |
cagcatatgacacgagtaatagcttaatggttagatcaagatttaacaaaaatttcacacccgaccaaatgcacattaattttcgtattgggtagtttac |
34359561 |
T |
|
Q |
685 |
tgcaatggagtagcttgactgctttaacattcaatagaatgaagttgtgttttccagtnnnnnnnnttgcaaatggcttagatggagatgtggtctctct |
784 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
T |
34359562 |
tgcaatggagtagcttgactgctttaacattcaatagaatgaagttgtgttttccagtaaaaaaaattgcaaatggcttagatggagatgtggtctctct |
34359661 |
T |
|
Q |
785 |
cacttgtgtggttgttcttggtccaatgtgaatgatcttctgaactcttatcatggtccaacaatg |
850 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
34359662 |
cacttgtgtggttgttcttggtccaatgtgaatgatcttctgaactcttatcatggtccaacaatg |
34359727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 340 - 479
Target Start/End: Original strand, 52732649 - 52732782
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
||||||||||||||| ||||| ||||| ||| ||| |||||| |||||||||| | |||||||||| | |||||||||||||| |||||||| |||| |
|
|
T |
52732649 |
tccaactttaccctccccaac-ttttctctcacacaattttcaatgcaactttaat--tttgtctttt-ccttataaagtaaggg-cagtttagtaaaa- |
52732742 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
|||||||||| ||||||||||||||| |||| ||||||| |
|
|
T |
52732743 |
gtgttatatccaatgattatttcattccattttttaatct |
52732782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 398 - 472
Target Start/End: Original strand, 37445773 - 37445844
Alignment:
Q |
398 |
tttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattcc |
472 |
Q |
|
|
|||||||||||| |||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
T |
37445773 |
tttgtctttttc-ttataaagtaaggg-cagtttagtaaaa-gtgttatgtctaatgattatttcatttcattcc |
37445844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 34354116 - 34354292
Alignment:
Q |
62 |
caaggtgttcacgcggtgtgtcctgatgagagcaagcaatgacggtgcaagtagatatgaatgaaaaagcttctgtttgaggagaagcgtattcatatga |
161 |
Q |
|
|
||||||||||| ||||||| || ||||||||||||| ||||| | ||||| |||||||||||||| ||||| |||||||| || | || |||||| | |
|
|
T |
34354116 |
caaggtgttcaacgggtgtgttatgttgagagcaagcaacgacggggtaagtacatatgaatgaaaaaacttctatttgaggataaacatactcatatca |
34354215 |
T |
|
Q |
162 |
attgattga--ctcacacttaagaggaatattatttgtatttcaagagtgagagtctcacatttgatggaaaagttaaaagt |
241 |
Q |
|
|
|| || || | ||||||| ||||||| ||| |||| |||||||||| |||||||||||||||||||| || |||||| |
|
|
T |
34354216 |
atatatggattcacacacttgagaggaagattgtttg--tttcaagagt---agtctcacatttgatggaaatgtcaaaagt |
34354292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 36805454 - 36805401
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaatt |
489 |
Q |
|
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
T |
36805454 |
aaaagtgttatgtctaatgattatttcatttcattccttaatctgtgtgcaatt |
36805401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 480
Target Start/End: Original strand, 21045211 - 21045325
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| | |||||||||||| |||||||||||||| ||||||| |||| | ||||||| |||||||||| |
|
|
T |
21045211 |
cttttctctcacacaattttcaatgcaactttaat--tttgtctttttc-ttataaagtaaggg-cagtttaataaaa-gccttatatccaatgattatt |
21045305 |
T |
|
Q |
461 |
tcatttcattccttaatctg |
480 |
Q |
|
|
||||| |||||||||||||| |
|
|
T |
21045306 |
tcattccattccttaatctg |
21045325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 477
Target Start/End: Original strand, 45049835 - 45049888
Alignment:
Q |
423 |
gggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
|||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
T |
45049835 |
gggcagcttaggaaaa-gtgttatgtctaatgattatttcatttcattccttaat |
45049888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 436 - 477
Target Start/End: Original strand, 22212489 - 22212530
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
T |
22212489 |
aaaagtgttatgtctaatgattatttcatttcattccttaat |
22212530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 15501248 - 15501129
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
|||||| |||| |||| |||| ||||| ||| ||| ||||| |||||||||| | |||||| |||||| |||||||||||||| |||||||| ||||| |
|
|
T |
15501248 |
tccaacattactctcttcaac-ttttctctcacacaatttttaatgcaactttaa--gtttgtatttttc-ttataaagtaaggg-cagtttagtaaaaa |
15501154 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatt |
465 |
Q |
|
|
|||||| |||||||||||||||||| |
|
|
T |
15501153 |
-tgttatgtctaatgattatttcatt |
15501129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 470
Target Start/End: Original strand, 34096094 - 34096198
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| ||| |||||| | ||||||||||||| |||||||||||||| || ||||| |||| |||||| ||||||||||||| |
|
|
T |
34096094 |
cttttctctcacacaattttcaatgaaactttaa--gtttgtctttttc-ttataaagtaaggg-caatttagtaaaa-gtgttaagtctaatgattatt |
34096188 |
T |
|
Q |
461 |
tcatttcatt |
470 |
Q |
|
|
|||||||||| |
|
|
T |
34096189 |
tcatttcatt |
34096198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 54512081 - 54512212
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
|||||||||| |||||||||| ||||| ||| ||| || ||| |||||||||| | |||||| ||||| |||||||||||| | |||||||| ||||| |
|
|
T |
54512081 |
tccaactttatcctctccaac-ttttctctcacacaatgttcaatgcaactttaat--tttgtcattttc-ttataaagtaagag-cagtttagtaaaaa |
54512175 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
|||||||| ||| |||||||||||||||| |||||| |
|
|
T |
54512176 |
c-gttatatccaattattatttcatttcatttcttaat |
54512212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 436 - 479
Target Start/End: Original strand, 30022215 - 30022258
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
T |
30022215 |
aaaagtgttatatataatgattattttatttcattccttaatct |
30022258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 361 - 480
Target Start/End: Complemental strand, 32141060 - 32140946
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||| ||| | ||||||||||| |||||||||| |||||||||||| |||| ||||||| ||||||||||||| |
|
|
T |
32141060 |
cttttctctcacacaattttcaatgcaaattt--atgtttgtcttttg-tttataaagta-ggggcagtttagtaaaa-gtgttatgtctaatgattatt |
32140966 |
T |
|
Q |
461 |
tcatttcattccttaatctg |
480 |
Q |
|
|
||||| ||| ||||||||| |
|
|
T |
32140965 |
tcattcaatttcttaatctg |
32140946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 29840203 - 29840257
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| |||||||||||||||||| ||||||||||| || |||||||| |
|
|
T |
29840203 |
aaaagtgttatgtctaatgattatttcattccattccttaatttgtgtgcaattg |
29840257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 30492868 - 30492922
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| |||||||||||||||||| ||||||||||| || |||||||| |
|
|
T |
30492868 |
aaaagtgttatgtctaatgattatttcattccattccttaatttgtgtgcaattg |
30492922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 477
Target Start/End: Complemental strand, 31817274 - 31817162
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| | ||||| ||||| |||||||||||||| ||||||| ||||| |||||||| |||||||||| |
|
|
T |
31817274 |
cttttctctcacacaattttcaatgcaactttaat--tttgtattttttcttataaagtaaggga-agtttagtaaaaac-gttatatccaatgattatt |
31817179 |
T |
|
Q |
461 |
tcatttcattccttaat |
477 |
Q |
|
|
||||| |||| |||||| |
|
|
T |
31817178 |
tcattccatttcttaat |
31817162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 340 - 477
Target Start/End: Complemental strand, 43421218 - 43421087
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
||||||||||||||||||| ||||| ||| ||| || ||| |||||||||| | |||||||||||| |||||||||||| | || ||||| |||| |
|
|
T |
43421218 |
tccaactttaccctctccagg-ttttctctcacacaatattcaatgcaactttaat--tttgtctttttc-ttataaagtaagag-caatttagtaaaa- |
43421125 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
|| ||||||| ||||||||||||||| |||| |||||| |
|
|
T |
43421124 |
gtattatatccaatgattatttcattccatttcttaat |
43421087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 32140880 - 32140826
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| | |||||||||||| ||||||||||||||| || |||||||| |
|
|
T |
32140880 |
aaaagtgttatgtttaatgattatttgatttcattccttaatttgtgtgcaattg |
32140826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 38692529 - 38692583
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| | | |||||||||||||||||||||||||| | ||||||||| |
|
|
T |
38692529 |
aaaagtgttatctttgatgattatttcatttcattccttaatttatatgcaattg |
38692583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 42672537 - 42672591
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| |||||||||||||||||| |||||||||| || |||||||| |
|
|
T |
42672537 |
aaaagtgttatgtctaatgattatttcattatattccttaatttgtgtgcaattg |
42672591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 54092097 - 54092151
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|||||| |||| | |||||| ||||||||||||||||||||| || ||||||||| |
|
|
T |
54092097 |
aaaagtattatgtttaatgactatttcatttcattccttaatttgtatgcaattg |
54092151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 31987443 - 31987496
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaatt |
489 |
Q |
|
|
||||||||||| ||||||||||||||||||| ||| ||||| || |||||||| |
|
|
T |
31987443 |
aaaagtgttatctctaatgattatttcattttattttttaatttgtatgcaatt |
31987496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 822
Target Start/End: Original strand, 34353993 - 34354038
Alignment:
Q |
777 |
gtctctctcacttgtgtggttgttcttggtccaatgtgaatgatct |
822 |
Q |
|
|
|||||||||| |||| |||||||||||| ||||||||| ||||||| |
|
|
T |
34353993 |
gtctctctcatttgtatggttgttcttgatccaatgtggatgatct |
34354038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 340 - 479
Target Start/End: Complemental strand, 12172 - 12040
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
||||||||||||||||| ||| ||||| ||| ||| |||||| |||||||||| | ||||||||||||| ||||||||||||| |||||||| |||| |
|
|
T |
12172 |
tccaactttaccctctcaaac-ttttctctcacacaattttcaatgcaactttaa--gtttgtctttttc-ttataaagtaagg--cagtttagtaaaa- |
12080 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
||||||| |||||||||||||||||| ||||||||||||| |
|
|
T |
12079 |
gtgttatgtctaatgattatttcattccattccttaatct |
12040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 313 - 480
Target Start/End: Complemental strand, 26965626 - 26965465
Alignment:
Q |
313 |
ttttcaatacaactttaannnnnnncntccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcntt |
412 |
Q |
|
|
|||||||||||||||||| | ||||||||||||||||||||| ||||| ||| ||| |||||| |||||||||| | |||||||||||| || |
|
|
T |
26965626 |
ttttcaatacaactttaatttttttcttccaactttaccctctccaac-ttttctctcacacaattttcaatgcaactttaat--tttgtctttttc-tt |
26965531 |
T |
|
Q |
413 |
ataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
|||||||||||| |||||||| |||| | |||||||| |||||||||||||||| ||| ||||||||| |
|
|
T |
26965530 |
ataaagtaaggg-cagtttagtaaaa-gcgttatatccaatgattatttcattttatttcttaatctg |
26965465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 340 - 477
Target Start/End: Complemental strand, 27483284 - 27483153
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
||||||||||||||||||||| ||||| ||| || |||||| |||||||||| | ||||||||||||| |||||||||||||| | ||||| |||| |
|
|
T |
27483284 |
tccaactttaccctctccaac-ttttctctcacataattttcaatgcaactttaa--gtttgtctttttc-ttataaagtaagggaaa-tttagtaaaa- |
27483191 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||| |||||||||||||||||||||||||||||| |
|
|
T |
27483190 |
gtgttatgtctaatgattatttcatttcattccttaat |
27483153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 340 - 490
Target Start/End: Complemental strand, 44648502 - 44648357
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
||||||||||| ||||||||| |||| ||| ||| |||||| || ||||||| | |||||||||||| | ||||||||| || |||||||| |||| |
|
|
T |
44648502 |
tccaactttactctctccaacttttt-tctcacacaattttcaattcaactttaa--gtttgtcttttttctcataaagtaaagg-cagtttagtaaaa- |
44648408 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
T |
44648407 |
gtgttatgtctaatgattatttcatttcattccttaatctgtgtgcaattg |
44648357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 376 - 490
Target Start/End: Complemental strand, 647648 - 647539
Alignment:
Q |
376 |
attttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattcctta |
475 |
Q |
|
|
|||||| |||||||||| | ||||||||||||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| |||| |
|
|
T |
647648 |
attttcaatgcaactttaa--gtttgtctttttc-ttataaagtaaggg-cagtttagtaaaac-tgttatatctaatgattatttcatttcatttctta |
647554 |
T |
|
Q |
476 |
atctggatgcaattg |
490 |
Q |
|
|
||||| |||||||| |
|
|
T |
647553 |
atctgtgtgcaattg |
647539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 313 - 479
Target Start/End: Complemental strand, 1341047 - 1340887
Alignment:
Q |
313 |
ttttcaatacaactttaannnnnnncntccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcntt |
412 |
Q |
|
|
|||||||||||||||||| | |||||| ||||||||||||| |||||| ||| ||| |||||| |||||||||| | ||||||||||||| || |
|
|
T |
1341047 |
ttttcaatacaactttaatttttttcttccaacgttaccctctccaa-cttttctctcacacaattttcaatgcaacttt--aagtttgtctttttc-tt |
1340952 |
T |
|
Q |
413 |
ataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
||||||||| | || |||| ||||||||||||| |||||| ||||||||||| ||||| ||||||| |
|
|
T |
1340951 |
ataaagtaa-agacacttta-gaaaaagtgttatgtctaattattatttcattccattctttaatct |
1340887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 313 - 477
Target Start/End: Original strand, 19552566 - 19552725
Alignment:
Q |
313 |
ttttcaatacaactttaannnnnnncntccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcntt |
412 |
Q |
|
|
|||||||||||||||||| | ||||||||||||||||| ||| ||||| ||| || |||||| |||||||||| | ||||| |||||| || |
|
|
T |
19552566 |
ttttcaatacaactttaaattttttcttccaactttaccctctctaac-ttttctctcacagaattttcaatgcaactttaat--tttgtatttttc-tt |
19552661 |
T |
|
Q |
413 |
ataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||| |
|
|
T |
19552662 |
ataaagtaagga-cagtttagtaaaaaacgttatatccaatgattatttcatttcatttcttaat |
19552725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 313 - 479
Target Start/End: Complemental strand, 2568130 - 2567970
Alignment:
Q |
313 |
ttttcaatacaactttaannnnnnncntccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcntt |
412 |
Q |
|
|
|||||||||||||||||| | |||||||||||||| || || ||||| ||| ||| |||||| |||||||||| | ||||||||||||| || |
|
|
T |
2568130 |
ttttcaatacaactttaatttttttcttccaactttaccctttctaat-ttttctctcacacaattttcaatgcaactttaa--gtttgtctttttc-tt |
2568035 |
T |
|
Q |
413 |
ataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
||||||||||| || ||| | |||| |||||||||||||||||||||||||| |||||||||||| |
|
|
T |
2568034 |
ataaagtaagga-catttttgtaaaa-gtgttatatctaatgattatttcattcaattccttaatct |
2567970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 397 - 490
Target Start/End: Complemental strand, 38165698 - 38165608
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||||| ||||||||||||| |||||||| |||| ||||||| | |||||||||||||||| |||||||||||||| ||||||||| |
|
|
T |
38165698 |
gtttgtctttttc-ttataaagtaagga-cagtttagtaaaa-gtgttatgtttaatgattatttcattacattccttaatctgtatgcaattg |
38165608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 341 - 477
Target Start/End: Original strand, 25061758 - 25061886
Alignment:
Q |
341 |
ccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaag |
440 |
Q |
|
|
|||||||||| ||||||||| ||||| ||| || |||||| |||||||||| | |||||| ||||| |||||||||||||| ||||||| |||| | |
|
|
T |
25061758 |
ccaactttactctctccaac-ttttctctcatacaattttcaatgcaactttaa--gtttgt--ttttc-ttataaagtaagggt-agtttagtaaaa-g |
25061849 |
T |
|
Q |
441 |
tgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
|||||| |||||||||||||||||||||||||||||| |
|
|
T |
25061850 |
tgttatgtctaatgattatttcatttcattccttaat |
25061886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 313 - 480
Target Start/End: Original strand, 34059902 - 34060061
Alignment:
Q |
313 |
ttttcaatacaactttaannnnnnncntccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcntt |
412 |
Q |
|
|
|||||||||||||||||| | | ||||||||||||||||||| ||||| ||| ||| |||||| |||||||||| | ||||||||||| || |
|
|
T |
34059902 |
ttttcaatacaactttaatttttttctttcaactttaccctctccaac-ttttctctcgcacaattttcaatgcaactttaa----ttgtctttttc-tt |
34059995 |
T |
|
Q |
413 |
ataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
|||||||||||| ||||||| ||||| | ||||||| ||| ||||||||||| |||| ||||||||| |
|
|
T |
34059996 |
ataaagtaagggt-agtttagtaaaaact-ttatatccaattattatttcattccatttcttaatctg |
34060061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 397 - 477
Target Start/End: Original strand, 45095644 - 45095723
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||| ||||| ||||||||||||||||| ||||| |||| ||||||| | |||||||||||||||| ||||||||||| |
|
|
T |
45095644 |
gtttgtccttttc-ttataaagtaaggggcattttagtaaaatgtgttatgtttaatgattatttcattccattccttaat |
45095723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 362 - 480
Target Start/End: Complemental strand, 2662562 - 2662449
Alignment:
Q |
362 |
ttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattattt |
461 |
Q |
|
|
||||| ||| ||| |||||| |||||||||| || |||||||||||| ||||||| |||||| || ||||| |||| ||||||| |||||||||||||| |
|
|
T |
2662562 |
ttttctctcacacaattttcaatgcaactttaaa--tttgtctttttc-ttataaaataaggg-caatttagtaaaa-gtgttatgtctaatgattattt |
2662468 |
T |
|
Q |
462 |
catttcattccttaatctg |
480 |
Q |
|
|
||||| |||| |||||||| |
|
|
T |
2662467 |
catttgattctttaatctg |
2662449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 354 - 490
Target Start/End: Original strand, 43580552 - 43580685
Alignment:
Q |
354 |
ctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnt-tataaagtaaggggcagtttaggaaaaagtgttatatctaa |
452 |
Q |
|
|
||||||| |||| ||| ||| |||||| |||||||||| || |||||||||||| | |||||| ||||| |||||||| ||||| |||||||| ||| |
|
|
T |
43580552 |
ctccaactttttttctcacacaattttcaatgcaactttaaa--tttgtctttttcatatataaaacaaggg-cagtttagtaaaaa-tgttatatgtaa |
43580647 |
T |
|
Q |
453 |
tgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||||| ||||||||||||| |||||||| |
|
|
T |
43580648 |
tgattatttcattctattccttaatctgtgtgcaattg |
43580685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 361 - 490
Target Start/End: Original strand, 83377 - 83501
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| | | |||||| |||||||||| | ||||||||||||| |||||||||||||| ||||||| |||| ||||| | ||||||||||| | |
|
|
T |
83377 |
cttttctctcacgcaattttcaatgcaactttaa--gtttgtctttttc-ttataaagtaagggt-agtttagtaaaa-gtgttgtgtctaatgattaat |
83471 |
T |
|
Q |
461 |
tcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||||||||| || |||||||| |
|
|
T |
83472 |
tcatttcattccttaatttgtgtgcaattg |
83501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 40048938 - 40049067
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
|||| |||||||||||||||| ||| ||| || |||||| |||||||||| || |||||||||||| ||||||||||| |||| |||| |||| |
|
|
T |
40048938 |
tccagctttaccctctccaactttt---ctctcataattttcaatgcaactttaaa--tttgtctttttc-ttataaagtaa-aggcaattta-ataaaa |
40049029 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||| |||||||||||||||||| ||||||||||| |
|
|
T |
40049030 |
gtgttatgtctaatgattatttcattccattccttaat |
40049067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 480
Target Start/End: Complemental strand, 31290975 - 31290931
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
T |
31290975 |
aaaagtgttatgtctaataattatttcatttcattccttaatctg |
31290931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 423 - 490
Target Start/End: Original strand, 4392035 - 4392101
Alignment:
Q |
423 |
gggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| |||| ||||||| |||||| |||||||||||||||| |||||| || ||||||||| |
|
|
T |
4392035 |
gggcagtttagtaaaa-gtgttatgtctaataattatttcatttcatttcttaatttgtatgcaattg |
4392101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 425 - 480
Target Start/End: Complemental strand, 42857102 - 42857048
Alignment:
Q |
425 |
gcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
||||||||| ||||| |||||| ||||||||||||||||||| ||||||||||||| |
|
|
T |
42857102 |
gcagtttagtaaaaa-tgttatgtctaatgattatttcatttgattccttaatctg |
42857048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 477
Target Start/End: Complemental strand, 43599561 - 43599508
Alignment:
Q |
423 |
gggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||| |||| || |||| |||||||||||||||||||||||||||||| |
|
|
T |
43599561 |
gggcagtttagtaaaa-gtattatgtctaatgattatttcatttcattccttaat |
43599508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 43600228 - 43600152
Alignment:
Q |
398 |
tttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattcctta |
475 |
Q |
|
|
|||||| |||| ||||||||||| ||| ||||||| ||||| ||||||||||||| ||||||| |||||||| |||| |
|
|
T |
43600228 |
tttgtcattttttttataaagtaaagggaagtttagtaaaaa-tgttatatctaataattattttatttcatttctta |
43600152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 399 - 477
Target Start/End: Original strand, 53716121 - 53716196
Alignment:
Q |
399 |
ttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||| |||||||||||| | |||||||| |||| | |||||||| |||||||||||||||||||| |||||| |
|
|
T |
53716121 |
ttgtctttttc-ttataaagtaagag-cagtttagtaaaa-gcgttatatccaatgattatttcatttcatttcttaat |
53716196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 479
Target Start/End: Complemental strand, 37225666 - 37225553
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| | |||||||||||| ||||||||||||| |||||||| |||| || ||||||| |||||||||| |
|
|
T |
37225666 |
cttttctctcacacaattttcaatgcaactttaat--tttgtctttttc-ttataaagtaagga-cagtttagtaaaa-gtattatatccaatgattatt |
37225572 |
T |
|
Q |
461 |
tcatttcattccttaatct |
479 |
Q |
|
|
||||| ||| |||||||| |
|
|
T |
37225571 |
tcattgtatttcttaatct |
37225553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 43736871 - 43736838
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcat |
469 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |
|
|
T |
43736871 |
aaaagtgttatatctaatgattatttcatttcat |
43736838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 477
Target Start/End: Complemental strand, 46363081 - 46362970
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||| | |||||||||| || ||||| |||||| ||||||||||||| |||||||| ||||| ||||| ||||||||||||| |
|
|
T |
46363081 |
cttttctctcacacaatttacaatgcaactttaaa--tttgtatttttc-ttataaagtaagga-cagtttagtaaaaa-tgttaggtctaatgattatt |
46362987 |
T |
|
Q |
461 |
tcatttcattccttaat |
477 |
Q |
|
|
||||| |||||||||| |
|
|
T |
46362986 |
tcattcaattccttaat |
46362970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 477
Target Start/End: Original strand, 16240707 - 16240760
Alignment:
Q |
423 |
gggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
|||| |||||| ||||| |||||| ||||||||||||||||||||||||| |||| |
|
|
T |
16240707 |
gggctgtttagtaaaaa-tgttatgtctaatgattatttcatttcattccctaat |
16240760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 42791448 - 42791502
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|||||| |||| |||||||||||||||||| ||||||||||| || |||||||| |
|
|
T |
42791448 |
aaaagtattatgtctaatgattatttcattacattccttaatatgcgtgcaattg |
42791502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 477
Target Start/End: Complemental strand, 35099376 - 35099335
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||| |||||||||||||||||||| || |||||| |
|
|
T |
35099376 |
aaaagtgttatgtctaatgattatttcatttcgtttcttaat |
35099335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 22)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 342 - 477
Target Start/End: Complemental strand, 37437494 - 37437363
Alignment:
Q |
342 |
caactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagt |
441 |
Q |
|
|
|||||||| |||||| || ||||| ||| ||| |||||| |||||||||| | ||||||||||||| |||||||||||||| || ||||| ||||||| |
|
|
T |
37437494 |
caactttatcctctctaattttttctctcacacaattttcaatgcaactttaa--gtttgtctttttc-ttataaagtaaggg-caatttagtaaaaagt |
37437399 |
T |
|
Q |
442 |
gttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||| |||||||| ||||||||||||||||||||| |
|
|
T |
37437398 |
gttatgtctaatgaatatttcatttcattccttaat |
37437363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 371 - 479
Target Start/End: Complemental strand, 5317639 - 5317535
Alignment:
Q |
371 |
ccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcatt |
470 |
Q |
|
|
|||| |||||| |||||||||| | ||||||||||||| ||||||| ||||||||| ||||| |||| ||||||| ||||||||||||||||||||||| |
|
|
T |
5317639 |
ccacaattttcaatgcaactttaa--gtttgtctttttc-ttataaaataaggggcaatttagtaaaa-gtgttatgtctaatgattatttcatttcatt |
5317544 |
T |
|
Q |
471 |
ccttaatct |
479 |
Q |
|
|
||||||||| |
|
|
T |
5317543 |
ccttaatct |
5317535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 361 - 478
Target Start/End: Complemental strand, 24041095 - 24040983
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| | ||||||||||||| |||||||||||||| |||||||| |||| ||||||| ||||||||||||| |
|
|
T |
24041095 |
cttttctctcacacaattttcaatgcaactttaa--gtttgtctttttc-ttataaagtaaggg-cagtttagtaaaa-gtgttatgtctaatgattatt |
24041001 |
T |
|
Q |
461 |
tcatttcattccttaatc |
478 |
Q |
|
|
||||| |||||||||||| |
|
|
T |
24041000 |
tcattccattccttaatc |
24040983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 361 - 490
Target Start/End: Complemental strand, 28751479 - 28751355
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| ||| |||||| | ||||||| ||||| |||||||||||||| |||||||| ||||| |||||| ||||||||||||| |
|
|
T |
28751479 |
cttttctctcgcacaattttcaatgtaactttaa--gtttgtccttttc-ttataaagtaaggg-cagtttagtaaaaa-tgttatgtctaatgattatt |
28751385 |
T |
|
Q |
461 |
tcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
| |||||||||||||||||| |||||||| |
|
|
T |
28751384 |
ttatttcattccttaatctgtgtgcaattg |
28751355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 362 - 490
Target Start/End: Complemental strand, 84588 - 84465
Alignment:
Q |
362 |
ttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattattt |
461 |
Q |
|
|
||||| ||| ||| |||||| |||||||||| | ||||||||||||| ||||||||||||| || ||||| |||| ||||||| |||||||||||||| |
|
|
T |
84588 |
ttttctctcgcacaattttcaatgcaactttaa--gtttgtctttttc-ttataaagtaagga-cattttagtaaaa-gtgttatgtctaatgattattt |
84494 |
T |
|
Q |
462 |
catttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|||| ||||||||||||| |||||||| |
|
|
T |
84493 |
cattcaattccttaatctgtgtgcaattg |
84465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 490
Target Start/End: Complemental strand, 48259954 - 48259810
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
||||||||||||||||| ||| ||||| || ||| |||||| |||||||||| | |||| |||||||| |||||||| ||||| ||||||| |||| |
|
|
T |
48259954 |
tccaactttaccctctcaaac-ttttctttcacacaattttcaatgcaactttaa--gtttatctttttc-ttataaagcaaggg-cagtttaataaaa- |
48259861 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||| ||||| |||||||||||| ||||||||||||| |||||||| |
|
|
T |
48259860 |
gtgttatgtctaacgattatttcattctattccttaatctgtgtgcaattg |
48259810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 361 - 477
Target Start/End: Complemental strand, 50349934 - 50349817
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnt-----tataaagtaaggggcagtttaggaaaaagtgttatatctaatga |
455 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| | ||||||||||||| | ||||||||||||| |||||||| |||| ||||||| |||||||| |
|
|
T |
50349934 |
cttttctctcacacaattttcaatgcaactttaa--gtttgtctttttcttataattataaagtaaggg-cagtttagtaaaa-gtgttatgtctaatga |
50349839 |
T |
|
Q |
456 |
ttatttcatttcattccttaat |
477 |
Q |
|
|
|||||||||| ||||||||||| |
|
|
T |
50349838 |
ttatttcattccattccttaat |
50349817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 397 - 480
Target Start/End: Complemental strand, 1430574 - 1430493
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
||||||||||||| ||||||||||| | ||||||||| |||| |||||||||||||| ||||||||||| ||| ||||||||| |
|
|
T |
1430574 |
gtttgtctttttc-ttataaagtaaagtgcagtttagtaaaa-gtgttatatctaattattatttcattaaatttcttaatctg |
1430493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 372 - 477
Target Start/End: Complemental strand, 10691015 - 10690915
Alignment:
Q |
372 |
cacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattc |
471 |
Q |
|
|
||| |||||| |||||||||| | ||||||||||||| ||| ||||||| | |||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
T |
10691015 |
cacaattttcaatgcaactttaa--gtttgtctttttc-ttacgaagtaagtg-cagtttagtaaaaa-tgttatatctaatgattatttcatttcattt |
10690921 |
T |
|
Q |
472 |
cttaat |
477 |
Q |
|
|
|||||| |
|
|
T |
10690920 |
cttaat |
10690915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 342 - 490
Target Start/End: Original strand, 30006193 - 30006335
Alignment:
Q |
342 |
caactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagt |
441 |
Q |
|
|
||||||||||||||||||| ||||| ||| || |||||| |||||||||| || ||| |||||||| |||||||||||| | || ||||| || | || |
|
|
T |
30006193 |
caactttaccctctccaac-ttttctctcaaacaattttcaatgcaactttaaa--tttatctttttc-ttataaagtaagag-caatttagtaata-gt |
30006286 |
T |
|
Q |
442 |
gttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||| |||||||||||||||||| |||| |||||||| |||||||| |
|
|
T |
30006287 |
gttatgtctaatgattatttcattcaattcattaatctgtgtgcaattg |
30006335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 436 - 477
Target Start/End: Complemental strand, 6377287 - 6377246
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
T |
6377287 |
aaaagtgttatgtctaatgattatttcatttcattccttaat |
6377246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 397 - 465
Target Start/End: Original strand, 1428981 - 1429047
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatt |
465 |
Q |
|
|
||||||| ||||| ||||||||||| ||||||||||| |||| |||||||||||||| ||||||||||| |
|
|
T |
1428981 |
gtttgtccttttc-ttataaagtaaagggcagtttagtaaaa-gtgttatatctaataattatttcatt |
1429047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 372 - 493
Target Start/End: Original strand, 12002338 - 12002454
Alignment:
Q |
372 |
cacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattc |
471 |
Q |
|
|
||| |||||| |||||||||| | ||||||||||||| | ||||| ||||| |||||||| |||| || |||| ||| |||||||||||||||||||| |
|
|
T |
12002338 |
cacaattttcaatgcaactttaa--gtttgtctttttcat-ataaaacaaggg-cagtttagtaaaa-gtattatgtctgatgattatttcatttcattc |
12002432 |
T |
|
Q |
472 |
cttaatctggatgcaattgtct |
493 |
Q |
|
|
|||||| || ||||||||||| |
|
|
T |
12002433 |
cttaatatgtgtgcaattgtct |
12002454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 436 - 479
Target Start/End: Original strand, 12851883 - 12851926
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
|||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
T |
12851883 |
aaaagtgttatacctaatgattattttatttcattccttaatct |
12851926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 477
Target Start/End: Complemental strand, 40060994 - 40060866
Alignment:
Q |
343 |
aactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtg |
442 |
Q |
|
|
|||||||||||||||||| ||||| || || |||||| |||||||| | || || |||||||| |||||||||||||| || ||||| |||| ||| |
|
|
T |
40060994 |
aactttaccctctccaac-ttttctcttacaaaattttcaatgcaactataaaa--ttatctttttc-ttataaagtaaggg-caatttagtaaaa-gtg |
40060901 |
T |
|
Q |
443 |
ttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
|||| |||||| |||||||||||||||| |||||| |
|
|
T |
40060900 |
ttatgtctaatcattatttcatttcatttcttaat |
40060866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 397 - 477
Target Start/End: Original strand, 44583887 - 44583963
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||||| ||||||| ||||| ||||||||||||| |||||| |||||||||||||| |||||||| |||||| |
|
|
T |
44583887 |
gtttgtctttttc-ttataaaataagg--cagtttaggaaaat-tgttatgtctaatgattattttatttcatttcttaat |
44583963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 424 - 476
Target Start/End: Original strand, 40719155 - 40719206
Alignment:
Q |
424 |
ggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaa |
476 |
Q |
|
|
|||||||||| ||||| ||| || ||||||||||||||||||||||||||||| |
|
|
T |
40719155 |
ggcagtttagtaaaaa-tgtgatgtctaatgattatttcatttcattccttaa |
40719206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 52403598 - 52403671
Alignment:
Q |
405 |
ttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
||||| |||||||||||||| ||||||| || | |||||||||| ||||||||||||||| |||| ||||||||| |
|
|
T |
52403598 |
ttttccttataaagtaaggg-cagtttaataaca-gtgttatatccaatgattatttcattccatttcttaatctg |
52403671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 490
Target Start/End: Complemental strand, 17919833 - 17919768
Alignment:
Q |
423 |
gggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| |||| ||||||| | |||||||||||||||||||||| |||||||| ||| ||||| |
|
|
T |
17919833 |
gggcagtttagtaaaa-gtgttatgt-taatgattatttcatttcattcattaatctgtatgtaattg |
17919768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 362 - 480
Target Start/End: Original strand, 11650140 - 11650253
Alignment:
Q |
362 |
ttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattattt |
461 |
Q |
|
|
||||| ||| ||| |||| | |||||||||| | ||||||||||||| || ||||||||||| |||||||| ||||| | ||||||||||| |||||| |
|
|
T |
11650140 |
ttttctctcacacaatttccaatgcaactttaa--gtttgtctttttcttt-taaagtaaggg-cagtttagtaaaaa-tactatatctaatggttattt |
11650234 |
T |
|
Q |
462 |
catttcattccttaatctg |
480 |
Q |
|
|
|||| ||| ||||||||| |
|
|
T |
11650235 |
cattcaatttcttaatctg |
11650253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 490
Target Start/End: Complemental strand, 15698750 - 15698697
Alignment:
Q |
437 |
aaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|||||||||| |||||||||||||| |||| |||||||||| || |||||||| |
|
|
T |
15698750 |
aaagtgttatgtctaatgattatttaattttattccttaatttgtgtgcaattg |
15698697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 470
Target Start/End: Complemental strand, 45749536 - 45749466
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcatt |
470 |
Q |
|
|
||||||||||||| |||||||||||||| | |||||| |||| ||||||| |||||||||||||| ||| |||| |
|
|
T |
45749536 |
gtttgtctttttc-ttataaagtaaggg-cggtttagtaaaa-gtgttatgtctaatgattattttattccatt |
45749466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 342 - 479
Target Start/End: Complemental strand, 33056374 - 33056242
Alignment:
Q |
342 |
caactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagt |
441 |
Q |
|
|
|||||||| |||||||||| ||||| ||| ||| |||||| ||||| ||| || |||||||||||| | |||||||||||| |||||||| |||| || |
|
|
T |
33056374 |
caactttatcctctccaac-ttttctctcacacaattttcaatgcagttttaaa--tttgtctttttcttaataaagtaaggg-cagtttagtaaaa-gt |
33056280 |
T |
|
Q |
442 |
gttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
||||| | |||||||||||||||||||||||||||||| |
|
|
T |
33056279 |
gttatgtttaatgattatttcatttcattccttaatct |
33056242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 340 - 478
Target Start/End: Complemental strand, 22627445 - 22627313
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
||||||||||||||||||||| ||||| ||| ||| |||||| |||||||||| | ||||||||| || ||||||||||| || |||||||| ||| |
|
|
T |
22627445 |
tccaactttaccctctccaac-ttttctctcacacaattttcaatgcaactttaa--gtttgtcttatt-tttataaagtaaagg-cagtttagtaaat- |
22627352 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaatc |
478 |
Q |
|
|
||||||| | ||| ||||||||||||||||||||||||| |
|
|
T |
22627351 |
gtgttatgtttaacgattatttcatttcattccttaatc |
22627313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 361 - 480
Target Start/End: Complemental strand, 34002204 - 34002089
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| | |||||||||||| ||||||||||| | ||||||||| ||| |||||||||| |||||||||| |
|
|
T |
34002204 |
cttttctctcacacaattttcaatgcaactttaat--tttgtctttttc-ttataaagtaaagtgcagtttagcaaag-gtgttatatccaatgattatt |
34002109 |
T |
|
Q |
461 |
tcatttcattccttaatctg |
480 |
Q |
|
|
|||||||||| ||||||||| |
|
|
T |
34002108 |
tcatttcatttcttaatctg |
34002089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 313 - 477
Target Start/End: Complemental strand, 28044259 - 28044101
Alignment:
Q |
313 |
ttttcaatacaactttaannnnnnncntccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcntt |
412 |
Q |
|
|
|||||||||||||||||| | |||||||||| ||||||||| ||||| ||| ||| |||||| || ||||||| | |||||||||||| || |
|
|
T |
28044259 |
ttttcaatacaactttaatttttttcttccaactttatcctctccaat-ttttctctcacacaattttcaatacaactttaat--tttgtctttttc-tt |
28044164 |
T |
|
Q |
413 |
ataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
|||||||||||| |||||||| ||||| |||||||| |||||||||||||||| ||| |||||| |
|
|
T |
28044163 |
ataaagtaaggg-cagtttagtaaaaac-gttatatccaatgattatttcattttatttcttaat |
28044101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 17869389 - 17869443
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
T |
17869389 |
aaaagtgttatgtctaatgattatttcatttcattccttaatctgtgtgcaattg |
17869443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 372 - 475
Target Start/End: Original strand, 34733402 - 34733500
Alignment:
Q |
372 |
cacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattc |
471 |
Q |
|
|
||| |||||| |||||||||| | ||||||||||||| |||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||| |
|
|
T |
34733402 |
cacaattttcaatgcaactttaa--gtttgtctttttc-ttataaagtaagggt-agtttagtaaaa-gtgttatgtctaatgattatttcatttcattt |
34733496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 490
Target Start/End: Original strand, 42121604 - 42121748
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
||||||||||| |||||||| |||||| ||| || |||||| |||||||||| | || | |||||||| | ||||||||| || ||||||| | |||| |
|
|
T |
42121604 |
tccaactttactctctccaa-cttttctctcaaacaattttcaatgcaacttt--aagtgtatctttttc-taataaagtaa-ggtcagttta-gtaaaa |
42121697 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||| ||| |||||||||||||| |||||||||||||||||| |||||||| |
|
|
T |
42121698 |
gtgatatgtctaatgattatttgatttcattccttaatctgtgtgcaattg |
42121748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 19920284 - 19920230
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|||||||| || |||||||||||||||||||||||||||||| || ||||||||| |
|
|
T |
19920284 |
aaaagtgtcatgtctaatgattatttcatttcattccttaatttgtatgcaattg |
19920230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 398 - 480
Target Start/End: Complemental strand, 41905971 - 41905892
Alignment:
Q |
398 |
tttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
|||||||||||| |||||||||||||| |||||||| |||| | |||||||| ||||||||||||| |||||| ||||||||| |
|
|
T |
41905971 |
tttgtctttttc-ttataaagtaaggg-cagtttagtaaaa-gcgttatatccaatgattatttcagttcatttcttaatctg |
41905892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 18886768 - 18886841
Alignment:
Q |
405 |
ttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
||||| |||||||||||||| |||||||| |||| | |||||||||||||||||||||||| |||| |||| |||| |
|
|
T |
18886768 |
ttttccttataaagtaaggg-cagtttagtaaaa-gcgttatatctaatgattatttcattccatttcttagtctg |
18886841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 490
Target Start/End: Original strand, 32275257 - 32275401
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
||||||||||||||||| ||| ||||| || ||| |||||| |||||||||| | ||||| |||||| ||||||||||| || |||||||| ||||| |
|
|
T |
32275257 |
tccaactttaccctctcaaac-ttttccttcacacaattttcaatgcaactttaa--gtttgattttttc-ttataaagtaaagg-cagtttagtaaaaa |
32275351 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|| || | ||||||||||||||||||||| |||||| || |||||||| |
|
|
T |
32275352 |
c-gtcatgtttaatgattatttcatttcatttcttaatatgtgtgcaattg |
32275401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 490
Target Start/End: Complemental strand, 48838756 - 48838627
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcn----ttataaagtaaggggcagtttaggaaaaagtgttatatctaatgat |
456 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| || ||||||||||| ||||||||||||| |||||||| | ||| |||||| ||||||||| |
|
|
T |
48838756 |
cttttctctcacacaattttcaatgcaactttaaa--tttgtctttttttatttttataaagtaaggt-cagtttagtataaa-tgttatgtctaatgat |
48838661 |
T |
|
Q |
457 |
tatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|||||||||| |||||||||| || |||||||| |
|
|
T |
48838660 |
tatttcattttattccttaatttgtgtgcaattg |
48838627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 490
Target Start/End: Original strand, 40298978 - 40299044
Alignment:
Q |
423 |
gggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| |||| ||||||| || ||| ||||||||||||||||||||||| || |||||||| |
|
|
T |
40298978 |
gggcagtttagtaaaa-gtgttatgtccaattattatttcatttcattccttaatttgtgtgcaattg |
40299044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 478
Target Start/End: Complemental strand, 42259584 - 42259508
Alignment:
Q |
399 |
ttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatc |
478 |
Q |
|
|
||||||||||| |||||||||||||| || ||||| |||| ||||||| |||||| ||||| ||||||||||| |||||| |
|
|
T |
42259584 |
ttgtctttttc-ttataaagtaaggg-cattttagtaaaa-gtgttatgtctaataattatctcatttcattctttaatc |
42259508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 398 - 480
Target Start/End: Complemental strand, 3680959 - 3680880
Alignment:
Q |
398 |
tttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
|||||||||||| |||||||||||| | |||||||| |||| || |||| |||||||||||||||||| |||| |||||||| |
|
|
T |
3680959 |
tttgtctttttc-ttataaagtaagag-cagtttagtaaaa-gttttatgtctaatgattatttcattccattttttaatctg |
3680880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 313 - 477
Target Start/End: Complemental strand, 40987398 - 40987242
Alignment:
Q |
313 |
ttttcaatacaactttaannnnnnncntccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcntt |
412 |
Q |
|
|
|||||||||||||||||| | ||||||||||||||||||||| ||| ||| ||| |||||| |||||||||| || ||| |||||||| || |
|
|
T |
40987398 |
ttttcaatacaactttaatttttttcttccaactttaccctctccaactttt---ctctcacaattttcaatgcaactttaaa--tttatctttttc-tt |
40987305 |
T |
|
Q |
413 |
ataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||| || ||||| |||| ||||||| |||||||||||||||||||||||||||||| |
|
|
T |
40987304 |
ataaagtaagga-caatttagtaaaa-gtgttatgtctaatgattatttcatttcattccttaat |
40987242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 340 - 490
Target Start/End: Complemental strand, 29795290 - 29795146
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
||||||||||||||||||||| ||||| || ||| |||||| |||||||||| || ||||||||||| ||||||| |||||| |||||||| |||| |
|
|
T |
29795290 |
tccaactttaccctctccaac-ttttctttcacacaattttcaatgcaactttaaag--ttgtctttttc-ttataaaataaggg-cagtttagtaaaa- |
29795197 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|| |||| |||||||||||||||||| ||||| |||||||| |||||||| |
|
|
T |
29795196 |
gtattatgtctaatgattatttcattccattcattaatctgcgtgcaattg |
29795146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 361 - 479
Target Start/End: Original strand, 34225831 - 34225944
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| | ||||||||||||| |||||||||||||| || ||||| |||| | |||| ||||||||||||| |
|
|
T |
34225831 |
cttttctctcacacaattttcaatgcaactttaa--gtttgtctttttc-ttataaagtaaggg-caatttagtaaaat-tattatgtctaatgattatt |
34225925 |
T |
|
Q |
461 |
tcatttcattccttaatct |
479 |
Q |
|
|
||||||||||||||||||| |
|
|
T |
34225926 |
tcatttcattccttaatct |
34225944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 361 - 480
Target Start/End: Original strand, 7743482 - 7743596
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| || |||||||||||| |||||||||||||| || |||| |||| ||||||||||| ||||||||| |
|
|
T |
7743482 |
cttttctctcacacaattttcaatgcaactttaaa--tttgtctttttc-ttataaagtaaggg-caacttagtaaaa-gtgttatatctgatgattatt |
7743576 |
T |
|
Q |
461 |
tcatttcattccttaatctg |
480 |
Q |
|
|
|||||| |||| |||||||| |
|
|
T |
7743577 |
tcatttaattctttaatctg |
7743596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 341 - 480
Target Start/End: Original strand, 40410505 - 40410638
Alignment:
Q |
341 |
ccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaag |
440 |
Q |
|
|
||||||||||||||||||| |||||| || ||| |||||| |||||||||| | |||||||||||| ||||||||||| |||||||||| ||||| |
|
|
T |
40410505 |
ccaactttaccctctccaa-cttttctctgacacaattttcaatgcaacttt--aattttgtctttttc-ttataaagtaa-gggcagttta-ataaaag |
40410598 |
T |
|
Q |
441 |
tgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
|||||||| ||||||||| ||||| |||| ||||||||| |
|
|
T |
40410599 |
cgttatatccaatgattatgtcattccatttcttaatctg |
40410638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 436 - 477
Target Start/End: Original strand, 6592107 - 6592148
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
T |
6592107 |
aaaagtgttatgtctaatgattatttcatttcattccttaat |
6592148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 397 - 490
Target Start/End: Complemental strand, 36360412 - 36360322
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|||| |||||||| ||||||| |||||| |||||||| |||| ||||||| |||||||||||||||||||||||| ||||| || |||||||| |
|
|
T |
36360412 |
gtttatctttttc-ttataaaataaggg-cagtttagtaaaa-gtgttatgtctaatgattatttcatttcattctttaatttgcgtgcaattg |
36360322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 398 - 477
Target Start/End: Complemental strand, 4840763 - 4840687
Alignment:
Q |
398 |
tttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
|||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||| |||| |||||| |
|
|
T |
4840763 |
tttgtctttttc-ttataaagtaaggg-cagtttagtaaaaac-gttatatccaatgattatttcattccatttcttaat |
4840687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 477
Target Start/End: Original strand, 4536701 - 4536754
Alignment:
Q |
423 |
gggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||| |||| ||| ||| |||||||||||||||||||||||||||||| |
|
|
T |
4536701 |
gggcagtttagtaaaa-gtgatatgtctaatgattatttcatttcattccttaat |
4536754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 14511602 - 14511642
Alignment:
Q |
437 |
aaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
|||| ||||| |||||||||||||||||||||||||||||| |
|
|
T |
14511602 |
aaagggttatgtctaatgattatttcatttcattccttaat |
14511642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 465
Target Start/End: Complemental strand, 14378319 - 14378220
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| || |||||| |||||||||| || ||| |||||||| |||||||||||||| |||||||| |||| ||||||||| |||||||||| |
|
|
T |
14378319 |
cttttctctcgcataattttcaatgcaactttaaa--tttatctttttc-ttataaagtaaggg-cagtttagtaaaa-gtgttatattaaatgattatt |
14378225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 340 - 462
Target Start/End: Original strand, 1381802 - 1381916
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
|||||||||||| |||||||| ||| ||| ||| |||||| |||||| ||| | |||| |||||||| |||||||||||| | |||||||| |||| |
|
|
T |
1381802 |
tccaactttaccttctccaactttt---ctctcacaattttcaatgcaattttaa--gtttttctttttc-ttataaagtaagag-cagtttagtaaaa- |
1381893 |
T |
|
Q |
440 |
gtgttatatctaatgattatttc |
462 |
Q |
|
|
||||||| ||||||||||||||| |
|
|
T |
1381894 |
gtgttatgtctaatgattatttc |
1381916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 24775340 - 24775394
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|||||||||||||||||||||||||||||| || ||||||| || |||||||| |
|
|
T |
24775340 |
aaaagtgttatatctaatgattatttcattcaataccttaatttgtgtgcaattg |
24775394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 44228617 - 44228651
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcatt |
470 |
Q |
|
|
|||||||||||||||||||||||||||||| |||| |
|
|
T |
44228617 |
aaaagtgttatatctaatgattatttcattccatt |
44228651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 479
Target Start/End: Complemental strand, 1298816 - 1298738
Alignment:
Q |
398 |
tttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
|||||||||||| |||||||||||||| || ||||| ||||| ||||||| |||||||||||||||| ||| |||||||| |
|
|
T |
1298816 |
tttgtctttttc-ttataaagtaaggg-caatttagtaaaaac-gttatattcaatgattatttcattttatttcttaatct |
1298738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 467
Target Start/End: Complemental strand, 4766283 - 4766182
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| | |||||||||||| ||||||||||| || |||||||| || || |||||||| |||||||||| |
|
|
T |
4766283 |
cttttctctcacacaattttcaatgcaactttaat--tttgtctttttc-ttataaagtaaagg-cagtttagtaataac-gttatatccaatgattatt |
4766189 |
T |
|
Q |
461 |
tcatttc |
467 |
Q |
|
|
||||||| |
|
|
T |
4766188 |
tcatttc |
4766182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 340 - 480
Target Start/End: Complemental strand, 14980139 - 14980008
Alignment:
Q |
340 |
tccaactttaccctctccaaccttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaa |
439 |
Q |
|
|
||||||||||||||||||||| ||||| | || |||||| |||||||||| | |||||||||||| |||||||||||||| |||||| || |||| |
|
|
T |
14980139 |
tccaactttaccctctccaactttttctc----acaattttcaatgcaactttaat--tttgtctttttc-ttataaagtaaggg-cagttt-ggtaaaa |
14980049 |
T |
|
Q |
440 |
gtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
|||||||||| ||||||||||||||| |||| ||||||||| |
|
|
T |
14980048 |
gtgttatatccaatgattatttcattccatttcttaatctg |
14980008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 397 - 489
Target Start/End: Original strand, 36660541 - 36660630
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaatt |
489 |
Q |
|
|
||||||||||||| ||||||||||||| || ||||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
T |
36660541 |
gtttgtctttttc-ttataaagtaagga-cattttagtaaaa-gtgttatgtctaatgattatttcatttcattccttaatctgtgtgcaatt |
36660630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 372 - 490
Target Start/End: Complemental strand, 43257920 - 43257807
Alignment:
Q |
372 |
cacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattc |
471 |
Q |
|
|
||| |||||| |||||||||| | |||||||| |||| |||||||||||||| |||||||| | || ||||||| |||||||||||||||||||||||| |
|
|
T |
43257920 |
cacaattttcaatgcaactttaa--gtttgtctatttc-ttataaagtaaggg-cagtttagtataa-gtgttatgtctaatgattatttcatttcattc |
43257826 |
T |
|
Q |
472 |
cttaatctggatgcaattg |
490 |
Q |
|
|
|||||||| |||||||| |
|
|
T |
43257825 |
tttaatctgtgtgcaattg |
43257807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 423 - 490
Target Start/End: Complemental strand, 166662 - 166596
Alignment:
Q |
423 |
gggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
T |
166662 |
gggcagtttagtaaaa-gtgttatttctaatgattatttcatttcattccttaatctgtgtgcaattg |
166596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 12992205 - 12992259
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| |||||||||||||||||||||||||||||| || ||||||||| |
|
|
T |
12992205 |
aaaagtgttatgtctaatgattatttcatttcattccttaatttgtatgcaattg |
12992259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 479
Target Start/End: Complemental strand, 24436541 - 24436498
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
||||||||||||||||||||||||||||||| |||||||||||| |
|
|
T |
24436541 |
aaaagtgttatatctaatgattatttcattttattccttaatct |
24436498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 4751531 - 4751477
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| |||||||||||||||||||||||||||||| || |||||||| |
|
|
T |
4751531 |
aaaagtgttatgtctaatgattatttcatttcattccttaatatgtgtgcaattg |
4751477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 13066856 - 13066910
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||| | |||||||||||||||||||||||||||||| || ||||||||| |
|
|
T |
13066856 |
aaaagtgttgtgtctaatgattatttcatttcattccttaatttgtatgcaattg |
13066910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 361 - 490
Target Start/End: Original strand, 36783437 - 36783561
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| || |||||||||||| | | || ||||||| || ||||| ||||| |||||| ||||||||||||| |
|
|
T |
36783437 |
cttttctctcacacaattttcaatgcaactttaaa--tttgtctttttcataacaa-gtaaggg-caatttagtaaaaa-tgttatgtctaatgattatt |
36783531 |
T |
|
Q |
461 |
tcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||| ||||||||| |||||||| |
|
|
T |
36783532 |
tcatttcatctcttaatctgtgtgcaattg |
36783561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 398 - 480
Target Start/End: Complemental strand, 4967527 - 4967448
Alignment:
Q |
398 |
tttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
||||||||||| |||||||||||||| |||||||| |||| | |||||||| ||||||||||||||| |||| ||||||||| |
|
|
T |
4967527 |
tttgtcttttt-tttataaagtaaggg-cagtttagtaaaa-gcgttatatccaatgattatttcattccatttcttaatctg |
4967448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 342 - 465
Target Start/End: Complemental strand, 12167700 - 12167582
Alignment:
Q |
342 |
caactttaccctctccaaccttttcnctcccacna-ttttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaag |
440 |
Q |
|
|
||||||||||||||||||| ||||| ||| ||| | ||||| |||||||||| | ||||| | ||||| |||||||||||||| |||||||| |||| | |
|
|
T |
12167700 |
caactttaccctctccaac-ttttctctcacacaaattttcaatgcaactttaa--gtttgaccttttc-ttataaagtaaggg-cagtttagtaaaa-g |
12167607 |
T |
|
Q |
441 |
tgttatatctaatgattatttcatt |
465 |
Q |
|
|
|||| | |||||||||||||||||| |
|
|
T |
12167606 |
tgttttgtctaatgattatttcatt |
12167582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 397 - 480
Target Start/End: Original strand, 34919851 - 34919931
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
||||||||||||| |||||||||||||| |||||||| |||| || ||| || ||||||||||| |||||||||||||||||| |
|
|
T |
34919851 |
gtttgtctttttc-ttataaagtaaggg-cagtttagtaaaat-tgctatgtccaatgattattttatttcattccttaatctg |
34919931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 4742267 - 4742213
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| ||| |||||||||||||||||||||||||| || |||||||| |
|
|
T |
4742267 |
aaaagtgttatgtctgatgattatttcatttcattccttaatatgtgtgcaattg |
4742213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 480
Target Start/End: Original strand, 31889801 - 31889915
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| | |||||||||||| |||||||||||||| |||||||| |||| ||||||| ||| |||||| |
|
|
T |
31889801 |
cttttctctcacacaattttcaatgcaactttaat--tttgtctttttc-ttataaagtaaggg-cagtttagtgaaaac-gttatattcaataattatt |
31889895 |
T |
|
Q |
461 |
tcatttcattccttaatctg |
480 |
Q |
|
|
||||| |||| ||||||||| |
|
|
T |
31889896 |
tcattccatttcttaatctg |
31889915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 477
Target Start/End: Original strand, 4371502 - 4371543
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||| ||| |||||||||||||||||| ||||||||||| |
|
|
T |
4371502 |
aaaagtgctatgtctaatgattatttcattccattccttaat |
4371543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 392
Target Start/End: Original strand, 16886111 - 16886189
Alignment:
Q |
313 |
ttttcaatacaactttaannnnnnncntccaactttaccctctccaaccttttcnctcccacnattttccatgcaacttt |
392 |
Q |
|
|
|||||||||||||||||| | |||||||||||||||||||| |||||| || ||| |||||| |||||||||| |
|
|
T |
16886111 |
ttttcaatacaactttaatttttttcttccaactttaccctctccaa-cttttctatcacacaattttcaatgcaacttt |
16886189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 480
Target Start/End: Original strand, 16886198 - 16886265
Alignment:
Q |
411 |
ttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
|||||||||||||| |||||||| ||| |||||| |||||| |||||||||||||||||||| ||||| |
|
|
T |
16886198 |
ttataaagtaaggg-cagtttagtaaat-gtgttacgtctaataattatttcatttcattccttgatctg |
16886265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 361 - 490
Target Start/End: Complemental strand, 12828752 - 12828628
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| | | ||||||||||| |||||||||||||| |||||||| |||| ||||||| ||||||||||||| |
|
|
T |
12828752 |
cttttctctcacacaattttcaatgcaactttaagc--ttgtctttttc-ttataaagtaaggg-cagtttagtaaaa-gtgttatgtctaatgattatt |
12828658 |
T |
|
Q |
461 |
tcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| ||||| || |||||||| |
|
|
T |
12828657 |
tcatttcattcattaatttgtgtgcaattg |
12828628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 397 - 477
Target Start/End: Complemental strand, 34439446 - 34439368
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||||| ||||||| ||| ||||| |||| ||||| |||||||||||||||||||||||||||||| |||||| |
|
|
T |
34439446 |
gtttgtctttttc-ttataaaataaagggcaatttaataaaaa-tgttatatctaatgattatttcatttcatttcttaat |
34439368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 372 - 477
Target Start/End: Complemental strand, 23936644 - 23936543
Alignment:
Q |
372 |
cacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattc |
471 |
Q |
|
|
||| |||||| |||||||||| || ||||| |||||| ||||||||||| ||||| || || ||||| ||||||||||||||||||||||||| |||| |
|
|
T |
23936644 |
cacaattttcaatgcaactttaaa--tttgtttttttc-ttataaagtaaagggcaattcagtaaaaa-tgttatatctaatgattatttcattccattt |
23936549 |
T |
|
Q |
472 |
cttaat |
477 |
Q |
|
|
|||||| |
|
|
T |
23936548 |
cttaat |
23936543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 436 - 477
Target Start/End: Original strand, 30627233 - 30627274
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
30627233 |
aaaagtgttatatctaatgattatttcatttcattcattaat |
30627274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 361 - 465
Target Start/End: Original strand, 29915623 - 29915723
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||| | |||||||||| | ||||||||||||| ||||||||||| |||||||||| |||| ||||||| |||||| |||||| |
|
|
T |
29915623 |
cttttctctcacacaatttccaatgcaacttt--atgtttgtctttttc-ttataaagtaaatggcagtttagtaaaa-gtgttatttctaattattatt |
29915718 |
T |
|
Q |
461 |
tcatt |
465 |
Q |
|
|
||||| |
|
|
T |
29915719 |
tcatt |
29915723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 8052486 - 8052540
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| ||||||||||||||||||||||| |||||| || |||||||| |
|
|
T |
8052486 |
aaaagtgttatgtctaatgattatttcatttcatttcttaatttgtgtgcaattg |
8052540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 490
Target Start/End: Complemental strand, 31275701 - 31275588
Alignment:
Q |
372 |
cacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattc |
471 |
Q |
|
|
||| |||||| |||||||||| | ||||||||||||| | ||||| ||||| |||||| || |||||||||| ||||||| |||||||||||| ||| |
|
|
T |
31275701 |
cacaattttcaatgcaactttaa--gtttgtctttttcat-ataaaacaaggg-cagttt-ggtaaaagtgttacgtctaatggttatttcatttctttc |
31275607 |
T |
|
Q |
472 |
cttaatctggatgcaattg |
490 |
Q |
|
|
||||||||| |||||||| |
|
|
T |
31275606 |
cttaatctgtgtgcaattg |
31275588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 372 - 490
Target Start/End: Complemental strand, 38329114 - 38329002
Alignment:
Q |
372 |
cacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattc |
471 |
Q |
|
|
||| |||||| |||||||||| | ||||||||||| ||||||||||||| |||||||| |||| ||||||| |||||||||||||||||| ||||| |
|
|
T |
38329114 |
cacaattttcaatgcaactttaa--gtttgtcttttg-attataaagtaagg--cagtttagtaaaa-gtgttatgtctaatgattatttcattccattc |
38329021 |
T |
|
Q |
472 |
cttaatctggatgcaattg |
490 |
Q |
|
|
||||||||| |||||||| |
|
|
T |
38329020 |
cttaatctgtgtgcaattg |
38329002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 372 - 490
Target Start/End: Complemental strand, 32326785 - 32326672
Alignment:
Q |
372 |
cacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattc |
471 |
Q |
|
|
||| |||||| |||||||||| || |||||||||||| | ||||| ||||| |||||||| |||| |||||| |||||||||||||||||||||||| |
|
|
T |
32326785 |
cacaattttcaatgcaactttaaa--tttgtctttttcat-ataaaacaaggg-cagtttagtaaaa-gtgttacgtctaatgattatttcatttcattc |
32326691 |
T |
|
Q |
472 |
cttaatctggatgcaattg |
490 |
Q |
|
|
||||||||| |||||||| |
|
|
T |
32326690 |
cttaatctgtgtgcaattg |
32326672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 372 - 490
Target Start/End: Original strand, 36915457 - 36915570
Alignment:
Q |
372 |
cacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattc |
471 |
Q |
|
|
||| |||||| |||||||||| | ||||||||||||| | ||||| ||||| || ||||| ||||| | |||| |||||||||||||||||| ||||| |
|
|
T |
36915457 |
cacaattttcaatgcaactttaa--gtttgtctttttcat-ataaaacaaggg-caatttagtaaaaa-tattatgtctaatgattatttcattccattc |
36915551 |
T |
|
Q |
472 |
cttaatctggatgcaattg |
490 |
Q |
|
|
||||||||| ||||||||| |
|
|
T |
36915552 |
cttaatctgtatgcaattg |
36915570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 361 - 480
Target Start/End: Original strand, 7612579 - 7612692
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||||| |||||||||| | |||||||||||| |||||||||||||| |||||||| ||| | |||||||| |||||||||| |
|
|
T |
7612579 |
cttttctctcacacaattttcaatgcaactttaat--tttgtctttttc-ttataaagtaaggg-cagtttagtaaa--gcgttatatccaatgattatt |
7612672 |
T |
|
Q |
461 |
tcatttcattccttaatctg |
480 |
Q |
|
|
||||| ||| ||||||||| |
|
|
T |
7612673 |
tcattctatttcttaatctg |
7612692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 477
Target Start/End: Original strand, 156371 - 156412
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||| ||||||||||||||||||||| |||||||| |
|
|
T |
156371 |
aaaagtgttatgtctaatgattatttcatttcaatccttaat |
156412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 477
Target Start/End: Original strand, 41414983 - 41415024
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
T |
41414983 |
aaaagtgttacgtctaatgattatttcatttcattccttaat |
41415024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 2067822 - 2067894
Alignment:
Q |
405 |
ttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
||||| |||||||||||||| ||||||| |||| | |||||||| ||||||||||||||| |||| |||||||| |
|
|
T |
2067822 |
ttttccttataaagtaaggg-cagtttaataaaa-gcgttatatcaaatgattatttcattccatttcttaatct |
2067894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 490
Target Start/End: Original strand, 2812915 - 2812981
Alignment:
Q |
423 |
gggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| |||| ||||||| |||||||||||||||||| ||| |||||| || ||||||||| |
|
|
T |
2812915 |
gggcagtttagtaaaa-gtgttatgtctaatgattatttcattcaattacttaatttgtatgcaattg |
2812981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 480
Target Start/End: Original strand, 6839322 - 6839402
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
||||||||||||| ||||||||||| || || ||||| |||| ||||||| |||||||||||||||||| |||| |||||||| |
|
|
T |
6839322 |
gtttgtctttttc-ttataaagtaaagg-caatttagtaaaa-gtgttatgtctaatgattatttcattccattttttaatctg |
6839402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 465
Target Start/End: Complemental strand, 27109892 - 27109792
Alignment:
Q |
361 |
cttttcnctcccacnattttccatgcaactttcaacgtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatt |
460 |
Q |
|
|
|||||| ||| ||| |||| | |||||||||| | ||||||| ||||| ||||||||||| | || ||||| |||| ||||||||||||||||||||| |
|
|
T |
27109892 |
cttttctctcacacaatttccaatgcaactttaa--gtttgtccttttc-ttataaagtaaaagacaatttagtaaaa-gtgttatatctaatgattatt |
27109797 |
T |
|
Q |
461 |
tcatt |
465 |
Q |
|
|
||||| |
|
|
T |
27109796 |
tcatt |
27109792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 480
Target Start/End: Original strand, 32737880 - 32737960
Alignment:
Q |
397 |
gtttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatctg |
480 |
Q |
|
|
|||| |||||||| ||||||||||| |||||||||| |||| |||||||||||||||| ||||||||| ||| ||||||||| |
|
|
T |
32737880 |
gtttttctttttc-ttataaagtaaagggcagtttaacaaaa-gtgttatatctaatga-tatttcattcaatttcttaatctg |
32737960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 8106889 - 8106835
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||| ||| |||||||||||||||||||||||| ||||| || |||||||| |
|
|
T |
8106889 |
aaaagtgctatgtctaatgattatttcatttcattctttaatttgtgtgcaattg |
8106835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 423 - 477
Target Start/End: Original strand, 39970455 - 39970508
Alignment:
Q |
423 |
gggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaat |
477 |
Q |
|
|
||||||||||| |||| ||| ||| |||||||||||||||||||||||| ||||| |
|
|
T |
39970455 |
gggcagtttagtaaaa-gtggtatgtctaatgattatttcatttcattctttaat |
39970508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 45187297 - 45187243
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
|||||||| || |||||||||||||||||| ||||||||||||| |||||||| |
|
|
T |
45187297 |
aaaagtgtcatgtctaatgattatttcattatattccttaatctgtgtgcaattg |
45187243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0580
Description:
Target: scaffold0580; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 479
Target Start/End: Original strand, 1690 - 1768
Alignment:
Q |
398 |
tttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
|||||||||||| ||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||| |||||||| |
|
|
T |
1690 |
tttgtctttttc-ttataaagtaaggt-cagtttagtaaaaa-tgttatatccaatgattatttcatttcatttcttaatct |
1768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 479
Target Start/End: Original strand, 9429 - 9507
Alignment:
Q |
398 |
tttgtctttttcnttataaagtaaggggcagtttaggaaaaagtgttatatctaatgattatttcatttcattccttaatct |
479 |
Q |
|
|
|||||||||||| ||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||| |||||||| |
|
|
T |
9429 |
tttgtctttttc-ttataaagtaaggt-cagtttagtaaaaa-tgttatatccaatgattatttcatttcatttcttaatct |
9507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 13069 - 13016
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaatt |
489 |
Q |
|
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
T |
13069 |
aaaagtgttatgtctaatgattatttcatttcattccttaatctgtgtgcaatt |
13016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 31695 - 31749
Alignment:
Q |
436 |
aaaagtgttatatctaatgattatttcatttcattccttaatctggatgcaattg |
490 |
Q |
|
|
||||||||||| |||||||||||||||||||||||| ||||| || |||||||| |
|
|
T |
31695 |
aaaagtgttatctctaatgattatttcatttcattcgttaatttgtgtgcaattg |
31749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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