View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-13_15 (Length: 919)
Name: J5-13_15
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-13_15 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 555; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 361 - 919
Target Start/End: Complemental strand, 34538550 - 34537992
Alignment:
| Q |
361 |
aaattaataatgaacctgcgatttgtgataataacctgttatttataagttatagacactcatcaaaatgatgtgatattctgttgaaaacatgtagaga |
460 |
Q |
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| T |
34538550 |
aaattaataatgaacctgcgatttgtgataataacctgttatttataagttatagacacttatcaaaatgatgtgatattctgttgaaaacatgtagaga |
34538451 |
T |
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| Q |
461 |
ttttccatgtatttgttgaaatctgcagtgaggacagtaaagttgtaatctggaaacctaaaaattagtttattaggctgctgaagttttgatggtttga |
560 |
Q |
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| T |
34538450 |
ttttccatgtatttgttgaaatctgcagtgaggacagtaaagttgtaatctggaaacctaaaaattagtttattaggctgctgaagttttgatggtttga |
34538351 |
T |
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| Q |
561 |
gcatatggttgataggaccaaaacttgcccaaagttgatggtaagattaccaactattagcttcgaaaagtaaaatttgttaactttcacacatttatct |
660 |
Q |
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| T |
34538350 |
gcatatggttgataggaccaaaacttgcccaaagttgatggtaagattaccaactattagcttcgaaaagtaaaatttgttaactttcacacatttatct |
34538251 |
T |
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| Q |
661 |
atacatctatgactgagataaatagtctcaagaagttttagtctggcgtatcagctgttcaccaatgttttgtttttcctatgcagagatcatgacgatg |
760 |
Q |
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| T |
34538250 |
atacatctatgactgagataaatagtctcaagaagttttagtctggcgtatcagctgttcaccaatgttttgtttttcctatgcagagatcatgacgatg |
34538151 |
T |
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| Q |
761 |
agaaagatgaagatgcacagtcaggtgtttagtttagcagtcagttgtgtttggagtctgcttttttatatttctttacatcaagtggaactttgtcatg |
860 |
Q |
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| T |
34538150 |
agaaagatgaagatgcacagtcaggtgtttagtttagcagtcagttgtgtttggagtctgcttttttatatttctttacatcaagtggaactttgtcatg |
34538051 |
T |
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| Q |
861 |
cagattcaatttttggatttcactagcactactaattctcaaaacatcttaacctgttc |
919 |
Q |
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| T |
34538050 |
cagattcaatttttggatttcactagcactactaattctcaaaacatcttaacctgttc |
34537992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 34537996 - 34537629
Alignment:
| Q |
1 |
tgttccagtttattttgtttatcttattactcactagcacttattcacgtttgccagtgaattaaaacttcaaaatattcatcatgattcatatattaag |
100 |
Q |
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| T |
34537996 |
tgttccagtttattttgtttatcttattactcactagcacttattcacgtttgccagtgaattaaaacttcaaaatattcatcatgattcatatattaag |
34537897 |
T |
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| Q |
101 |
agaagtcttctaaataaatatggatgggttggtattgaaattacatcaacaataaaaatcatctggttgtggaaaatcttgaatttgtacaaagagattg |
200 |
Q |
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| T |
34537896 |
agaagtcttctaaataaatatggatgggttggtattgaaattacatcaacaataaaaatcatctggttgtggaaaatcttgaatttgtacaaagagattg |
34537797 |
T |
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| Q |
201 |
gaacnnnnnnncttctcattctttcgctatgtttcctaaattgcctcctaaggttagaaagattgtatatgaatatgagaagggtaggaaaaagaaaaga |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34537796 |
gaactttttttcttctcattctttcgctatgtttcctaaattgcctcctaaggttagaaagattgtatatgaatatgagaagtgtaggaaaaagaaaaga |
34537697 |
T |
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| Q |
301 |
attaggaggtaactcaatctcaaataggagatcttgatcaacctgctataaatcaaccacaaattaat |
368 |
Q |
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| T |
34537696 |
attaggagttaactcaatctcaaataggagatcttgatcaacttgttataaatcaaccacaaattaat |
34537629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 773 - 882
Target Start/End: Complemental strand, 34533407 - 34533295
Alignment:
| Q |
773 |
atgcacagtcaggtgtttagtttagcagtcagttgtgtttggagtctgcttttttatatttctttac---atcaagtggaactttgtcatgcagattcaa |
869 |
Q |
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||||| ||||||| ||| ||||||||||| ||||| ||||||||| |||||||| ||||||||||| ||||||||||||| | |||||||| ||||| |
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| T |
34533407 |
atgcatagtcaggaattttgtttagcagtcggttgtttttggagtcagcttttttttatttctttacatcatcaagtggaactctctcatgcagtttcaa |
34533308 |
T |
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| Q |
870 |
tttttggatttca |
882 |
Q |
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| T |
34533307 |
tttttggatttca |
34533295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 716 - 766
Target Start/End: Original strand, 38634303 - 38634353
Alignment:
| Q |
716 |
tgttcaccaatgttttgtttttcctatgcagagatcatgacgatgagaaag |
766 |
Q |
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|||||||||||||||| |||||||||||||||| | |||| |||||||||| |
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| T |
38634303 |
tgttcaccaatgttttatttttcctatgcagaggttatgaggatgagaaag |
38634353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 716 - 753
Target Start/End: Original strand, 39851268 - 39851305
Alignment:
| Q |
716 |
tgttcaccaatgttttgtttttcctatgcagagatcat |
753 |
Q |
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| T |
39851268 |
tgttcaccaatgttttatttttcctatgcagagatcat |
39851305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 734 - 767
Target Start/End: Original strand, 38637319 - 38637352
Alignment:
| Q |
734 |
ttttcctatgcagagatcatgacgatgagaaaga |
767 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
38637319 |
tttttctatgcagagatcatgacgatgagaaaga |
38637352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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