View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-21-06 (Length: 348)
Name: J5-21-06
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-21-06 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 91 - 348
Target Start/End: Complemental strand, 3780598 - 3780341
Alignment:
| Q |
91 |
aattggtccattcatgtcaatcgaagacaacacaagttcattctggcaagaagacgcaacatgtttagattggctcgatcaatatccacctcaatccgtc |
190 |
Q |
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| T |
3780598 |
aattggtccattcatgtcaatcgaagacaacacaagttcattctggcaagaagacgcaacatgtttagattggctcgatcaatatccacctcaatccgtc |
3780499 |
T |
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| Q |
191 |
gcatatgtttcctttggtagtttggccgtaatggaccaaaaccaatttaacgaactagctttaggacttgatcttcttgataaaccttttatttgggttg |
290 |
Q |
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| T |
3780498 |
gcatatgtttcctttggtagtttggccgtaatggaccaaaaccaatttaacgaactagctttaggacttgatcttcttgataaaccttttatttgggttg |
3780399 |
T |
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| Q |
291 |
ttcgtccgagcaatgataataaggtaaactatgcataccctgatgaatttcttggaac |
348 |
Q |
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| T |
3780398 |
ttcgtccgagcaatgataataaggtaaactatgcataccctgatgaatttcttggaac |
3780341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 118 - 348
Target Start/End: Complemental strand, 3768293 - 3768063
Alignment:
| Q |
118 |
caacacaagttcattctggcaagaagacgcaacatgtttagattggctcgatcaatatccacctcaatccgtcgcatatgtttcctttggtagtttggcc |
217 |
Q |
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||||| |||||||||||||||||||||| || | ||||||||||| ||| | | ||| | ||||| |||| |||||||||||| ||||||||||| |
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| T |
3768293 |
caacaaaagttcattctggcaagaagacatgacttccttagattggctagataagcaaccatcacaatcggtcgtatatgtttccttcggtagtttggca |
3768194 |
T |
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| Q |
218 |
gtaatggaccaaaaccaatttaacgaactagctttaggacttgatcttcttgataaaccttttatttgggttgttcgtccgagcaatgataataaggtaa |
317 |
Q |
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| T |
3768193 |
gtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttttctttgggttgttcgtcctagtaatgacaacaaggtaa |
3768094 |
T |
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| Q |
318 |
actatgcataccctgatgaatttcttggaac |
348 |
Q |
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| T |
3768093 |
actatgcataccctgatgaattcctcggaac |
3768063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 117 - 336
Target Start/End: Original strand, 3800477 - 3800696
Alignment:
| Q |
117 |
acaacacaagttcattctggcaagaagacgcaacatgtttagattggctcgatcaatatccacctcaatccgtcgcatatgtttcctttggtagtttggc |
216 |
Q |
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| T |
3800477 |
acaacaaaagttcattatggcaagaagactcaacttgcttagattggttagataaacaagcacctcaatctgtcatatatgtttcctttggtagcttggt |
3800576 |
T |
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| Q |
217 |
cgtaatggaccaaaaccaatttaacgaactagctttaggacttgatcttcttgataaaccttttatttgggttgttcgtccgagcaatgataataaggta |
316 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||| || |||||| |||||||||||||||| || ||||| ||||||||| |
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| T |
3800577 |
agtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttttctttgggttgttcgtcctagtaatgacaataaggta |
3800676 |
T |
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| Q |
317 |
aactatgcataccctgatga |
336 |
Q |
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| T |
3800677 |
aactatacataccctaatga |
3800696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 117 - 336
Target Start/End: Complemental strand, 3789630 - 3789411
Alignment:
| Q |
117 |
acaacacaagttcattctggcaagaagacgcaacatgtttagattggctcgatcaatatccacctcaatccgtcgcatatgtttcctttggtagtttggc |
216 |
Q |
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|||||| ||||||||| |||||||||||| |||| || ||||| ||| | ||| || | |||||||||| ||| |||||||||||||||||| |||| |
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| T |
3789630 |
acaacaaaagttcattatggcaagaagactcaacttgcttagaatggttagataaacaagcacctcaatcagtcatatatgtttcctttggtagcttggt |
3789531 |
T |
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| Q |
217 |
cgtaatggaccaaaaccaatttaacgaactagctttaggacttgatcttcttgataaaccttttatttgggttgttcgtccgagcaatgataataaggta |
316 |
Q |
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| T |
3789530 |
agtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagccttttctttgggttgttcgtcctagtaatgacaataaggta |
3789431 |
T |
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| Q |
317 |
aactatgcataccctgatga |
336 |
Q |
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|||||| |||||||| |||| |
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| T |
3789430 |
aactatacataccctaatga |
3789411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3780345 - 3780252
Alignment:
| Q |
1 |
ggaactaaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaatt |
94 |
Q |
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| T |
3780345 |
ggaactaaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaatt |
3780252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3768067 - 3767974
Alignment:
| Q |
1 |
ggaactaaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaatt |
94 |
Q |
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||||||||||||||||| ||| | |||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||| |
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| T |
3768067 |
ggaactaaaggaaagatcgttagttgggtaccgcagaagaagatattgaaccatcctgctatagcttgtttcattagtcattgtggttggaatt |
3767974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 3755629 - 3755550
Alignment:
| Q |
134 |
tggcaagaagacgcaacatgtttagattggctcgatcaatatccacctcaatccgtcgcatatgtttcctttggtagttt |
213 |
Q |
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| T |
3755629 |
tggcaagaagatgaaacatgcatagaatggttagatcaatatccacctaaatctgtcatatatgtttcatttggtagttt |
3755550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3789403 - 3789310
Alignment:
| Q |
1 |
ggaactaaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaatt |
94 |
Q |
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|||| |||||| || |||||||| ||||| || |||| || ||||||||||| || || |||||||| ||||| ||||| || |||||||||| |
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| T |
3789403 |
ggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatggaatt |
3789310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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