View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-21-08 (Length: 701)
Name: J5-21-08
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-21-08 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 8842316 - 8841854
Alignment:
| Q |
1 |
gaatatatacaatcaacaaccccggttcataagcataaactgtctattttgaaaaatgcagaagnnnnnnntatatttcaaaagcattcagcatccaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
8842316 |
gaatatatacaatcaacaaccccggttcataagcataaactgtctattttgaaaaatgcagaagaaaaaaatatatttcaaaagcattcagcatccaata |
8842217 |
T |
|
| Q |
101 |
tcaattacaattcaagccttaaatacaacatcacaatgcttataaactaatcaaaaataacaaaaattgaacacaataggcttcattcaacgaacacatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8842216 |
tcaattacaattcaagccttaaatacaacatcacaatgcttataaactaatcaaaaataacaaaaattgaacacaataggcttcattcaacgaacacatc |
8842117 |
T |
|
| Q |
201 |
ataaggcaaaaggtcatcaatctttataactttcttcacaatgcagatccttcaagaataccaacctctccatggagaacttgtttatgaggtagtgata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8842116 |
ataaggcaaaaggtcatcaatctttataactttcttcacaatgcagatccttcaagaataccaacctctccatggagaacttgtttatgaggtagtgata |
8842017 |
T |
|
| Q |
301 |
tagttactttaccaaaacatccctataattaattaaacaacaaaaagtagtttttacacatcaacaaaggaataggaagaagcaaggacacaaaactaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8842016 |
tagttactttaccaaaacatccctataattaattaaacaacaaaaagtagtttttacacatcaacaaaggaataggaagaagcaaggacacaaaactaca |
8841917 |
T |
|
| Q |
401 |
accacatcgagataaaatcacacacacaaatgctgaaaaatagaagaagaatangcacaattg |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8841916 |
accacatcgagataaaatcacacacacaaatgctgaaaaatagaagaagaataagcacaattg |
8841854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 2 - 340
Target Start/End: Original strand, 25354512 - 25354853
Alignment:
| Q |
2 |
aatatatacaatcaacaaccccggttcataagcataaactgtctattttgaaaaatgcagaagnnnnnnn-tatatttcaaaagcattcagcatccaata |
100 |
Q |
| |
|
|||||||||||| | ||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
25354512 |
aatatatacaattaccaaaccctgttcataagcataagctgtctattttgaaaaatgcagaagaaaaaaaatatattttaaaagcattcagcatccaata |
25354611 |
T |
|
| Q |
101 |
tcaattacaattcaagccttaaatacaacatcacaatgcttataaactaatcaaaaataaca-aaaattgaacacaataggcttcattcaacgaacacat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25354612 |
tcaattacaattcaagccttaaatacaacatcacaatgcttataaactaatccaaaataacagaaaattgaacacaataggcttcattcaacgaacacat |
25354711 |
T |
|
| Q |
200 |
cataaggcaaaag-gtcatcaatctttataactttcttcacaatgcagatccttcaagaataccaacctctccatggagaacttgtttatgaggtagtga |
298 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| |||||||||||||||| |
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|
| T |
25354712 |
cataaggcaaaaatgtcatcaatctttataactttcttcacaatgcaaatccttcaagaataccaactactccatgaagaactcgtttatgaggtagtga |
25354811 |
T |
|
| Q |
299 |
tatagttactttaccaaaacatccctataattaattaaacaa |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25354812 |
tatagttactttaccaaaacatccctataaataattaaacaa |
25354853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 335 - 463
Target Start/End: Original strand, 25356353 - 25356481
Alignment:
| Q |
335 |
aaacaacaaaaagtagtttttacacatcaacaaaggaataggaagaagcaaggacacaaaactacaaccacatcgagataaaatcacacacacaaatgct |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25356353 |
aaacaacaaaaagtagtttttacacatcaacaaaggaattggaagaatcaatgacacaaaactacaaccacatcgagataaaatcacacgcacaaatgct |
25356452 |
T |
|
| Q |
435 |
gaaaaatagaagaagaatangcacaattg |
463 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
25356453 |
gaaaaatagaagaagaataagcacaattg |
25356481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 458 - 579
Target Start/End: Complemental strand, 8842749 - 8842626
Alignment:
| Q |
458 |
caattgcaataaattataactagtcgccgacccgtgcgatagcacgggttaatgatgagattca-ttncaagcaacatatggac-ttggtttaaataaaa |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||| |
|
|
| T |
8842749 |
caattgcaataaattataactagtcgccgacccgtgcgatagcacgggttaatgatgagattcatttacaagcaacatatggactttgttttaaataaaa |
8842650 |
T |
|
| Q |
556 |
aatattcaataaaaacaacatgaa |
579 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
8842649 |
aatattcaataaaaacaacatgaa |
8842626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 15763812 - 15763478
Alignment:
| Q |
1 |
gaatatatacaatcaacaaccccggttcataagcataaactgtctattttgaaaaatgcagaagnnnnnnntatatttcaaaagcattcagcatccaata |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15763812 |
gaatatatacaatcagcaaccccgattcataaacataagctgtttattttgaaaaatgcagaagaaaaaaatatatttcaaaagcattcagcatccaata |
15763713 |
T |
|
| Q |
101 |
tcaattacaattcaagccttaaatacaacatcacaatgcttataaactaatcaaaaataaca-aaaattgaacacaataggcttcattcaacgaacacat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |
|
|
| T |
15763712 |
tcaattacaattcaagccttaaatacaacatcacaatgcttataaactaatcaaaaataacagaaaactgaacacaataggcttcattcaacgaacatat |
15763613 |
T |
|
| Q |
200 |
cata------------aggcaaaaggtcatcaatctttataactttcttcacaatgcagatccttcaagaataccaacctctccatggagaacttgttta |
287 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15763612 |
cataaggcaaaaggttaggcaaaaggttatcaatctttataactttcttcacaatgcagatccttcaagaataccaacctctccatggagaactcgttta |
15763513 |
T |
|
| Q |
288 |
tgaggtagtgatatagttactttaccaaaacatcc |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
15763512 |
tgaggtagtgatatagttactttaccaaaacatcc |
15763478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 335 - 463
Target Start/End: Complemental strand, 15762701 - 15762576
Alignment:
| Q |
335 |
aaacaacaaaaagtagtttttacacatcaacaaaggaataggaagaagcaaggacacaaaactacaaccacatcgagataaaatcacacacacaaatgct |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | | |
|
|
| T |
15762701 |
aaacaacaaaaagtagtttttacacatcaacaaaggattaggaagaagcaatgacacaaaactacaaccacatcgagataaaatcacacgcacaca---t |
15762605 |
T |
|
| Q |
435 |
gaaaaatagaagaagaatangcacaattg |
463 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |
|
|
| T |
15762604 |
gaaaaatataagaagaataagcacaattg |
15762576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 474 - 579
Target Start/End: Complemental strand, 15764272 - 15764165
Alignment:
| Q |
474 |
taactagtcgccgacccgtgcgatagcacgggttaatgatgagattca-ttncaagcaacatatggac-ttggtttaaataaaaaatattcaataaaaac |
571 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
15764272 |
taactagtcgccgacccatgctatcgcacgggttaatgatgagattcatttacaagcaacatatggactttgttttaaataaaagatattcaataaaaac |
15764173 |
T |
|
| Q |
572 |
aacatgaa |
579 |
Q |
| |
|
|||||||| |
|
|
| T |
15764172 |
aacatgaa |
15764165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 421
Target Start/End: Complemental strand, 39728091 - 39728006
Alignment:
| Q |
335 |
aaacaacaaaaagtagtttttacacatcaacaaaggaataggaagaagcaaggacacaaaactacaaccacatcgagataaaatcac |
421 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||| ||| |||||||| ||||| ||| || ||||||| |||||| ||||||| |
|
|
| T |
39728091 |
aaacaacaaaaattagtttttacggttcaacaaatgaacaggcagaagcaatgacacgaaa-tataaccacaacgagatcaaatcac |
39728006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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