View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-21-36 (Length: 654)
Name: J5-21-36
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-21-36 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 89 - 567
Target Start/End: Complemental strand, 38043254 - 38042775
Alignment:
| Q |
89 |
caattgtttggatgtacaccacactattgagcatcatctccgctactacattataagtcctcacatttacacgtcaccttaaacactagtaaccaaacaa |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38043254 |
caattgtttggatgtacaccacactattgagcatcatctccgctactacattataagtcctcacatttacacgtcaccttaaacactagtaaccaaacaa |
38043155 |
T |
|
| Q |
189 |
catggatccttcgtactaacccaaaagtcaccgaatcatttatttttctcttatttccaatttattagtattcattcatttatcaattnnnnnnngtcct |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38043154 |
catggatccttcgtactaacccaaaagtcaccgaatcatttatttttctcttatttccaatttattagtattcattcatttatcaattaaaaaaagtcct |
38043055 |
T |
|
| Q |
289 |
tatccgtgctacaacnnnnnnnnnnnnnnnnnnngataacatactaatccacgttcccacttaggcattggcaaatcacaattaacagcaactaactact |
388 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38043054 |
tatccgtgctacaacttttttttgttttgtttttgataacatactaatccacgttcccacttaggcattggcaaatcacaattaacagcaactaactact |
38042955 |
T |
|
| Q |
389 |
atatataaccatcaaccaaacaccttccttcccttcttttcaatccatcaccctcttattacactttcacaccttctaaactttctataaccatgccaac |
488 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38042954 |
atatataaccatcaaccaaacaccttccttcccttcttttcaatccatcaccctcttattacactttcacaccttctaaactttctataaccatgccaac |
38042855 |
T |
|
| Q |
489 |
tacacttagaacaagaagaagaaacaacctcaaacgcctcaattacctatgtttctcaactttcatac-acctcaatctc |
567 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
38042854 |
tacacttagaacaagaagaagaaacaacctcaaacgcctcaattacctatgtttctcaactttcatacaacctcaatctc |
38042775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 38042456 - 38042363
Alignment:
| Q |
1 |
catattcaccggacccttacatggattttcgaaggtcaatgcaagagatggtggaagcgcaaccagagttgatgaaggacgtgaagtccaattg |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38042456 |
catattcaccggacccttacatggattttcgaaggtcaatgcaagagatggtggaagcgcaaccagagttgatgaaggacgtgaagtccaattg |
38042363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 31980804 - 31980863
Alignment:
| Q |
15 |
ccttacatggattttcgaaggtcaatgcaagagatggtggaagcgcaaccagagttgatg |
74 |
Q |
| |
|
||||| ||||||||| |||| || ||||||||||||||||| |||| ||| ||||||||| |
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| T |
31980804 |
ccttatatggattttagaagatcgatgcaagagatggtggaggcgcgaccggagttgatg |
31980863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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