View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-21-50 (Length: 102)
Name: J5-21-50
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-21-50 |
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| [»] chr6 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 8842312 - 8842412
Alignment:
| Q |
1 |
tattcaacaataatgtttataggattcagtatttctatttttcgttatctgttttcgtttgtcatgaccattaacaagagccagggnacaatcccttaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8842312 |
tattcaacaataatgtttataggattcagtatttctatttttcgttatctgttttcgtttgtcatgaccattaacaagagccaggg-acaatcccttaat |
8842410 |
T |
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| Q |
101 |
ca |
102 |
Q |
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|| |
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| T |
8842411 |
ca |
8842412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 25354446 - 25354397
Alignment:
| Q |
28 |
agtatttctatttttcgttatctgttttcgtttgtcatgaccattaacaa |
77 |
Q |
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| T |
25354446 |
agtatctctatttttcgttatctgttttcgtttgccatgatcattaacaa |
25354397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 15763877 - 15763950
Alignment:
| Q |
28 |
agtatttctatttttcgttatctgttttcgtttgtcatgaccattaacaagagccagggnacaatcccttaatca |
102 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
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| T |
15763877 |
agtatctctatttttcgttatctgttttcgtttgccatgaccattaacaagagtcaggg-acaatcccttaatca |
15763950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 15763808 - 15763839
Alignment:
| Q |
1 |
tattcaacaataatgtttataggattcagtat |
32 |
Q |
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| T |
15763808 |
tattcaacaataatgtttataggattcagtat |
15763839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 42235561 - 42235622
Alignment:
| Q |
39 |
ttttcgttatctgttttcgtttgtcatgaccattaacaagagccagggnacaatcccttaatca |
102 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||| |
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| T |
42235561 |
ttttcgttatctgttt-cgtttgccatgaccattaacaagagccaagg-acaatcccttaatca |
42235622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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