View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-45 (Length: 711)
Name: J5-45
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-45 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 255 - 596
Target Start/End: Original strand, 43308700 - 43309043
Alignment:
| Q |
255 |
attaatttttgcaactgtgtcacacaattactgaacgaagtctcatttccactatgtggaggtaagttctaaggcaggttttagcatttgaaaattgttt |
354 |
Q |
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| T |
43308700 |
attaatttttgcaactgtgtcacacaattactgaacgaagtctcatttccactatgtggaggtaagttctaaggcaggttttagcatttgaaaattgttt |
43308799 |
T |
|
| Q |
355 |
caaactttaaatagaagaattgacaatcatccttgttatagcgtgcggtgtggtgtgacacaatgtttagattagtgtcggtgtgtcaatctagcaaaaa |
454 |
Q |
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| T |
43308800 |
caaactttaaatagaagaattgacaatcatccttgttatagcgtgcggtgtggtgtgacacaatgttt-gattagtgtcggtgtgtcaatctagcaaaaa |
43308898 |
T |
|
| Q |
455 |
caagtgatttagatggagcactttttattttcttaaaattaaagagggatccaaatcactttttatttactcaccgatggctctgaagctcgctaccact |
554 |
Q |
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| T |
43308899 |
caagtgatttagatggagcactttttattttcttaaaattaaagagggattcaaatcactttttatttactcaccgatggctctgaagctcgctaccact |
43308998 |
T |
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| Q |
555 |
tt-cccatctctgcct-caatgccgacc-atcatcccggaggccc |
596 |
Q |
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|| ||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
43308999 |
ttccccatctctgcctccaatgccgaccaatcatcccggaggccc |
43309043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 43309249 - 43309508
Alignment:
| Q |
1 |
ccaaacccgttcaaatgcgtgaacctccttttgttccctttggaccggttactatgcccagaccttggaccggtcggcctccacttccgccgagtaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43309249 |
ccaaacccgttcaaatgcgtgaacctccttttgttccctttggaccggttactatgcccagaccttggaccggtcggcctccacttccgccgagtaagaa |
43309348 |
T |
|
| Q |
101 |
gaagctcaaggagtttgattcttttgttcttcccccgccacataagaagggcgttaaaccggttcagtctcccggtccgtttttgcccgggactagcccg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43309349 |
gaagctcaaggagtttgattcttttgttcttcccccgccacataagaagggtgttaaaccggttcagtctcccggtccgtttttgcccgggactagcccg |
43309448 |
T |
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| Q |
201 |
aggtatgtgatgtctagagaagaagtgttgggtgaaccgttgacgaaggaggagattaat |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43309449 |
aggtatgtgatgtctagagaagaagtgttgggtgaaccgttgacgaaggaggagattaat |
43309508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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