View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-5-10 (Length: 263)
Name: J5-5-10
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 78 - 263
Target Start/End: Original strand, 41826031 - 41826216
Alignment:
| Q |
78 |
attaatataattttcctgtacaatatgcatgtttacagtttcagatttgacacaagcatctctaatgcaatgggattaaaaacaatatggttaatactcg |
177 |
Q |
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| T |
41826031 |
attaatataattttcctgtacaatatgcatgtttacagtttcagatttgacacaagcatctctaatgcaatgggattaaaaacaatatggttaatactcg |
41826130 |
T |
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| Q |
178 |
ttagttgttgtaatggctccaaggttgccatctaagaatatttactccgatgtaggaataatagttgtgtttttagagggttgaat |
263 |
Q |
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| T |
41826131 |
ttagttgttgtaatggctccaaggttgccatctaagaatatttactccgatgtaggaataatagttgtgtttttagagggttgaat |
41826216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 41826212 - 41826294
Alignment:
| Q |
1 |
tgaatgactcattgagttaacgttgaagaaattaaagaacttagatttaaacccgaaggaattagtaaataataaatattaat |
83 |
Q |
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| T |
41826212 |
tgaatgactcattgagttaacgttgaagaaattaaagaacttagatttaaacccgaaggaattagtaaataataaatattaat |
41826294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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