View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-5-11 (Length: 520)
Name: J5-5-11
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-11 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 210 - 520
Target Start/End: Complemental strand, 3135206 - 3134898
Alignment:
| Q |
210 |
attaatggcattccaattctaacaatgtgaatatataatatcagaaacaaaacaagtaaaagaaaaatggcaagactaaaccaaataataatgcttactc |
309 |
Q |
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| T |
3135206 |
attaatggcattccaattctaacaatgtgaatatataatatcagaaacaaaacaagtaaaagaaaaatggcaagactaaaccaaataataatgcttactc |
3135107 |
T |
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| Q |
310 |
cttgtgttcattatacaagtccctttcaagctttttccagcgggcatacatcaatagaaaaccctcactaccacaaggtaatccagcagctatacggtca |
409 |
Q |
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| T |
3135106 |
cttgtgttcattatacaagtccctttcaagctttttccagcgggcatacatcaatagaaaaccctcactaccacaaggtaatccagcagctatacggtca |
3135007 |
T |
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| Q |
410 |
acatcaatatttgtcttaccaagggcttttgcttggtcataaggaggaatgatatcatataagcttctttctgtaagttgctcctccttcatcctttggc |
509 |
Q |
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| T |
3135006 |
acatcaatatttgtcttaccaagggcttttgcttggtcataaggaggaatgatatcatataagcttctttctgtaagttgctcct-cttcatccttt-gc |
3134909 |
T |
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| Q |
510 |
anggattttta |
520 |
Q |
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| T |
3134908 |
aaggattttta |
3134898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3134902 - 3134688
Alignment:
| Q |
1 |
ttttacttgttcagtaaccttcttagtcagctttatctaggaaaaggcaaaattgagaaataaataaaagattaccaattaggcattttggtaggctaga |
100 |
Q |
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| T |
3134902 |
ttttacttgttcagtaaccttcttagtcagctttatctaggaaaaggcaaaattgagaaataaataaaagattaccaattaggcattttggtaggctaga |
3134803 |
T |
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| Q |
101 |
tttacatgcttttaatcaagaacaatttaacgttttgttaatattgaaaatctagaatgaagaacaagaaattaggaaggaataactgatggagagaaca |
200 |
Q |
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| T |
3134802 |
tttacatgcttttaatcaagaacaatttaacattttgttaatattgaaaatctagaatgaagaacaagaaattaggaaggaataactgatggagagaaca |
3134703 |
T |
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| Q |
201 |
ttatcctggattaat |
215 |
Q |
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| T |
3134702 |
ttatcctggattaat |
3134688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 303 - 488
Target Start/End: Complemental strand, 1928305 - 1928120
Alignment:
| Q |
303 |
cttactccttgtgttcattatacaagtccctttcaagctttttccagcgggcatacatcaatagaaaaccctcactaccacaaggtaatccagcagctat |
402 |
Q |
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|||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||| || ||||| || ||||| ||||||||||| |||| |||||| |
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| T |
1928305 |
cttactccttccgttcattatacaggtctctttcaagctttttccaccgggcatacattaagagaaacccttcacttccacaaggtaagccagaagctat |
1928206 |
T |
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| Q |
403 |
acggtcaacatcaatatttgtcttaccaagggcttttgcttggtcataaggaggaatgatatcatataagcttctttctgtaagtt |
488 |
Q |
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||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||| | |||||||||||| ||||||| |||| |
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| T |
1928205 |
acgatcaacatcaatatttgtcttcccaagtgctcttgcttggtcataaggaggaataacatcatataagctagtttctgtcagtt |
1928120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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