View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-5-21 (Length: 438)
Name: J5-5-21
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-21 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 216 - 438
Target Start/End: Complemental strand, 7210170 - 7209948
Alignment:
| Q |
216 |
attaatcttaataccttgtaacaccacggtattgagaagttctttgtccaaaagtatcaatagatttacgaggaacaggttctctagcattagattttga |
315 |
Q |
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| T |
7210170 |
attaatcttaataccttgtaacaccacggtattgagaagttctttgtccaaaagtatcaatagatttacgaggaacaggttctctagcattagattttga |
7210071 |
T |
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| Q |
316 |
caaagaccttttcctaggatcttcattcacttgaacattagaaattgcactaccaacacccccaccaacaccattttgcacacaaggactcatagtcnaa |
415 |
Q |
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| T |
7210070 |
caaagaccttttcctaggatcttcattcacttgaacattagaaattgcactaccaacacccccaccaacaccattttgcacacaaggactcatagtcaaa |
7209971 |
T |
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| Q |
416 |
ttaagagattgaaaaccatttcc |
438 |
Q |
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| T |
7209970 |
ttaagagattgaaaaccatttcc |
7209948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7209952 - 7209732
Alignment:
| Q |
1 |
tttccatcactggaagttgttttcccctcagaagaaaactgagtttgagtcatccaagatttatacatgctattatcatggattaaagcatgatgattgt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7209952 |
tttccatcactagaagttgttttcccctcagaagaaaactgagtttgagtcatccaagatttatacatgctattatcatggattaaagcatgatgattgt |
7209853 |
T |
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| Q |
101 |
tgttgctgtgatcattatatgcatgaaaagagtgaatcaaagattggtttgttagattctcccttgtgtcaatctctggattattattggtacaaaaact |
200 |
Q |
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| T |
7209852 |
tgttgctgtgatcattatatgcatgaaaagagtgaatcaaagattggtttgttagattctcccttgtgtcaatctctggattattattggtacaaaaact |
7209753 |
T |
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| Q |
201 |
tggtgacacattaacattaat |
221 |
Q |
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| T |
7209752 |
tggtgacacattaacattaat |
7209732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 40189379 - 40189324
Alignment:
| Q |
227 |
taccttgtaacaccacggtattgagaagttctttgtccaaaagtatcaatagattt |
282 |
Q |
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|||||||| ||||| | |||||||| |||||||| |||||||||||||||||||| |
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| T |
40189379 |
taccttgttacacctctatattgagaggttctttgaccaaaagtatcaatagattt |
40189324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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