View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-5-24 (Length: 529)
Name: J5-5-24
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-24 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 169 - 529
Target Start/End: Complemental strand, 45944211 - 45943851
Alignment:
| Q |
169 |
attaatttttatttttattcttaatcatagtctaattgtgtaaatgttttctaaacaggactttttgaacatgtatttcaaggataaatacaagcctata |
268 |
Q |
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| T |
45944211 |
attaatttttatttttattcttaatcatagtctaattgtgtaaatgttttctaaacaggactttttgaacatgtatttcaaggataaatacaagcctata |
45944112 |
T |
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| Q |
269 |
cctaatgtgtacaatcttgtgttggccatgatgtggcgtcatcctgagaatgttgagcttgagaaagttcaagttgttcactattgtgctgctgtgagat |
368 |
Q |
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| T |
45944111 |
cctaatgtgtacaatcttgtgttggccatgatgtggcgtcatcctgagaatgttgagcttgagaaagttcaagttgttcactattgtgctgctgtgagat |
45944012 |
T |
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| Q |
369 |
tgctacctctgataaataactatatgttttttcatttattttataattttgtgcttaactaantataantatagcagctaatttgattatgttatattac |
468 |
Q |
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| T |
45944011 |
tgctacctctgataaataactatatgttttttcatttattttataattttgtgcttaactaattataattatagcagttaatttgattatgttatattac |
45943912 |
T |
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| Q |
469 |
agggctctaagccttggaggtataccggagaggaacagaacatggacngagaagacataaa |
529 |
Q |
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| T |
45943911 |
agggctctaagccttggaggtataccggagaggaacagaacatggacagagaagacataaa |
45943851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 45943855 - 45943682
Alignment:
| Q |
1 |
ataaagatgctggtgaagaaatggaaagagatatatgaagatgagacattagattacaacaacaatgtcagagtggaacgtttcacagctgctctgttag |
100 |
Q |
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| T |
45943855 |
ataaagatgctggtgaagaaatggaaagagatatatgaagatgagacattagattacaacaacaatgtcagagtggaacgtttcacagctgctctgttag |
45943756 |
T |
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| Q |
101 |
aggctggtggtctgaagtcaatgcctgcatcaaatgctgcttaatatgcttcaatggttactaattaaattaat |
174 |
Q |
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| T |
45943755 |
aggctggtggtctgaagtcaatgcctgcatcaaatgctgcttaatatgcttcaatggttactaattaaattaat |
45943682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 357
Target Start/End: Original strand, 45037314 - 45037438
Alignment:
| Q |
233 |
ttgaacatgtatttcaaggataaatacaagcctatacctaatgtgtacaatcttgtgttggccatgatgtggcgtcatcctgagaatgttgagcttgaga |
332 |
Q |
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| T |
45037314 |
ttgaatatgtatttcaaggatatttataagccaatcccatttgtttacaatcttgttcttgctatgttatggcgtcaccctgaaaatgttgagcttcata |
45037413 |
T |
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| Q |
333 |
aagttcaagttgttcactattgtgc |
357 |
Q |
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| T |
45037414 |
aagtcaaggttgttcactattgtgc |
45037438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 230 - 357
Target Start/End: Original strand, 20395228 - 20395355
Alignment:
| Q |
230 |
tttttgaacatgtatttcaaggataaatacaagcctatacctaatgtgtacaatcttgtgttggccatgatgtggcgtcatcctgagaatgttgagcttg |
329 |
Q |
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| T |
20395228 |
tttttgaatatgtatttcaatgataaatataagcctatccctaatgtttacaatcttgtgctggccatgttgtggcgtcatcctgagaatgttgaacttg |
20395327 |
T |
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| Q |
330 |
agaaagttcaagttgttcactattgtgc |
357 |
Q |
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| T |
20395328 |
agaaagtcaaagttgttcattactgtgc |
20395355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 37687054 - 37686922
Alignment:
| Q |
225 |
aggactttttgaacatgtatttcaaggataaatacaagcctatacctaatgtgtacaatcttgtgttggccatgatgtggcgtcatcctgagaatgttga |
324 |
Q |
| |
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|||| ||||||||||| |||||||| || ||||| ||||| || || ||||| || |||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
37687054 |
aggattttttgaacatatatttcaaagacaaatataagccaattccaaatgtttataatcttgtgttggccatgttgtggcgtcaccctgagaatgttga |
37686955 |
T |
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| Q |
325 |
gcttgagaaagttcaagttgttcactattgtgc |
357 |
Q |
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| T |
37686954 |
acttgagaaagtcaaagttgttcattactgtgc |
37686922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 225 - 357
Target Start/End: Original strand, 37698464 - 37698596
Alignment:
| Q |
225 |
aggactttttgaacatgtatttcaaggataaatacaagcctatacctaatgtgtacaatcttgtgttggccatgatgtggcgtcatcctgagaatgttga |
324 |
Q |
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|||| ||||||||||| |||||||| || ||||| ||||| || || ||||| || |||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
37698464 |
aggattttttgaacatatatttcaaagacaaatataagccaattccaaatgtttataatcttgtgttggccatgttgtggcgtcaccctgagaatgttga |
37698563 |
T |
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| Q |
325 |
gcttgagaaagttcaagttgttcactattgtgc |
357 |
Q |
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| T |
37698564 |
acttgagaaagtcaaagttgttcattactgtgc |
37698596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 55222395 - 55222535
Alignment:
| Q |
225 |
aggactttttgaacatgtatttcaaggataaatacaag--cctatacctaatgtgtacaatcttgtgttggccatgatgtggcgtcatcctgagaatgtt |
322 |
Q |
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|||| |||||||||||||| ||||| || ||||| || || || |||||||| ||||||||||||||||||||| | ||||||| ||| |||||||| |
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| T |
55222395 |
aggattttttgaacatgtacttcaatgacaaatataaattccaattcctaatgtttacaatcttgtgttggccatgctatggcgtccccctaagaatgtt |
55222494 |
T |
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| Q |
323 |
gagcttgagaaagttcaagttgttcactattgtgctgctgt |
363 |
Q |
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|| ||||| || || |||||||||| || ||||||||||| |
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| T |
55222495 |
gaacttgaaaaggtcaaagttgttcattactgtgctgctgt |
55222535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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