View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-5-3 (Length: 491)
Name: J5-5-3
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-3 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 113 - 365
Target Start/End: Complemental strand, 23590042 - 23589790
Alignment:
| Q |
113 |
taatgcttctcgtatttttgctatatgaaaacacagcagcatccacctcctattcttcatcatgacaataataaaaatgacaagattcaacagggtattt |
212 |
Q |
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| T |
23590042 |
taatgcttctcgtatttttgctatatgaaaacacagcagcatccacctcctattcttcatcatgacaataataaaaatgacaagattcaacagggtattt |
23589943 |
T |
|
| Q |
213 |
ctcagatatttgaactgccatctactctatgcactgaactgaaattaccaattacagattatcaaccaggttacgaacacaatcaacaagaaagtttcag |
312 |
Q |
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| T |
23589942 |
ctcagatatttgaactgccatctactctatgcactgaactgaaattaccaattacagattatcaaccaggttacgaacacaatcaacaagaaagtttcag |
23589843 |
T |
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| Q |
313 |
ttctcacaataacaaacatatatacttgatgcaactagctgtgaaatgggagg |
365 |
Q |
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| T |
23589842 |
ttctcacaataacaaacatatatacttgatgcaactagctgtgaaatgggagg |
23589790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 426 - 491
Target Start/End: Complemental strand, 23589729 - 23589664
Alignment:
| Q |
426 |
gacaagcttttgaggggtaagggaattgaagcatgtgtaaaacaaatggctgtagatagagtgaaa |
491 |
Q |
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| T |
23589729 |
gacaagcttttgaggggtaagggaattgaagcatgtgtaaaacaaatggctgtagatagagtgaaa |
23589664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23589668 - 23589621
Alignment:
| Q |
1 |
tgaaagaccctctctttaatggtttcgtttctatttgtactaattaat |
48 |
Q |
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| T |
23589668 |
tgaaagaccctctctttaatggtttcgtttctatttgtactaattaat |
23589621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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