View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-5-30 (Length: 659)
Name: J5-5-30
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-30 |
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Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 55014785 - 55014232
Alignment:
| Q |
1 |
cctacaagaacatttgggttaggatttgttgaattgaagtatattgaaccttccttgcaagcaatctgttgaggatggtccttaatagaaggtagagatg |
100 |
Q |
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| T |
55014785 |
cctacaagaacatttgggttaggatttgttgaattgaagtatattgaaccttccttgcaagcaatctgttgaggatggtccttaatagaaggtagagatg |
55014686 |
T |
|
| Q |
101 |
agccacggtgatgaatacgttgtggatagttgttaccataaccaaccatgtaagataaacccaaggggttatcacctaaaatgtaatcaacttgtctctt |
200 |
Q |
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| T |
55014685 |
agccacggtgatgaatacgttgtggatagttgttaccataaccaaccatgtaagataaacccaaggggttatcacctaaaatgtaatcaacttgtctctt |
55014586 |
T |
|
| Q |
201 |
ggcgcgctcccgaagtgtttgtgcactaacataaacattgccacaattgatggtttgtgacgtgcgggataagtatttggcgtagactaactcaaggaaa |
300 |
Q |
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| T |
55014585 |
ggcgcgctcccgaagtgtttgtgcactaacataaacattgccacaattgatggtttgtgacgtgcgggataagtatttggcgtagactaactcaaggaaa |
55014486 |
T |
|
| Q |
301 |
gcaattgaagttgcatgttgtaagttgcttccacctggtctgtatatgagtccaccaggagtgtactcgatgtgtgaacttgatgtttcaggtagtaatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55014485 |
gcaattgaagttgcatgttgtaagttgcttccacctggtctgtatatgagtccaccaggagtgtactcgatgtgtgaacttgatgtttcaggtagtaatg |
55014386 |
T |
|
| Q |
401 |
tgcacaggaagctctctgccgaggtcttgtaagattcaagagattcaacatttccatctaggacttcctataacaacaattcatttactattgatcagca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55014385 |
tgcacaggaagctctctgccgaggtcttgtaagattcaagagattcaacatttccatctaggacttcctataacaacaattcatttactattgatcagca |
55014286 |
T |
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| Q |
501 |
tttacatt-aaacaatgtcaaatatatacatttgtgcgatttccacttattaat |
553 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
55014285 |
tttacattaaaacaatgtcaaatatatacatttgtgcgatttcaacttattaat |
55014232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 548 - 638
Target Start/End: Complemental strand, 55014873 - 55014784
Alignment:
| Q |
548 |
attaatatatgtagttggctcaaattttctatantcagccctgncatccncttaaacatcatcnttctcnaggtcctcccacaatagctcc |
638 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||| ||||| | ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
55014873 |
attaatatatgtagttggctcagattttctataatcagccctgtcatccacataaacatcatc-ttctccaggtcctcccacaatagctcc |
55014784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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