View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-5-36 (Length: 552)
Name: J5-5-36
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 42933467 - 42933649
Alignment:
| Q |
1 |
gatcctgttggtggttgttatagattcattcaacagcttcaatctcaatatgaattttatcaagctgagcttcatcttacacgtcaacaaatttctattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42933467 |
gatcctgttggtggttgttatagattcattcaacagcttcaatctcaatatgaattttatcaagctgagcttcatcttacacgtcaacaaatttctattt |
42933566 |
T |
|
| Q |
101 |
gtaaagctacacaatcacaacaacatcaacaacaatttgccgctgtgtctaatcatcattataatgacatgcatgtcattaat |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42933567 |
gtaaagctacacaatcacaacaacatcaacaacaatttgccgctgtgtctaatcatcattataatgacatgcatgtcattaat |
42933649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 178 - 327
Target Start/End: Original strand, 42933056 - 42933205
Alignment:
| Q |
178 |
attaatttcttaaaattacaacgtgaaatataatattggagtaaataatagaagagccagaaaaagcagcagaaaatttgcagggtgcataggcagcgga |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42933056 |
attaatttcttaaaattacaacgtgaaatataatattggagtaaataatagaagagccagaaaaagcagcagaaaatttgcagggtgcataggcagcgga |
42933155 |
T |
|
| Q |
278 |
gacgcttagcttattataaaatttagggtttggtttttccatgaagcatg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42933156 |
gacgcttagcttattataaaatttagggtttggtttttccatgaagcatg |
42933205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 379 - 543
Target Start/End: Original strand, 42933257 - 42933422
Alignment:
| Q |
379 |
gcttgtgctgcatgtaaatatcaacgtaggaagtgtggtacatcctgcattctcgcaccatattttcctcacgatcgtcnaaaacaattcttaaacgctc |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42933257 |
gcttgtgctgcatgtaaatatcaacgtaggaagtgtggtacatcctgcattctcgcaccatattttcctcacgatcgtcaaaaacaattcttaaacgctc |
42933356 |
T |
|
| Q |
479 |
ataaattggtttggtgctgggaaaatcaccaatatgatcaag-atgttcc-cctcatcttanagatc |
543 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||||||||| ||||||| |||||||||| ||||| |
|
|
| T |
42933357 |
ataaatt-gtttggtgttggtaaaatcaccaatatgatcaagaatgttccacctcatcttagagatc |
42933422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 8516 times since January 2019
Visitors: 7803