View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-5-37 (Length: 399)
Name: J5-5-37
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 122 - 397
Target Start/End: Original strand, 1435755 - 1436030
Alignment:
| Q |
122 |
attaatgctcttaatgttgaatttcaaaagttccagtttcaaactaaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatggctctcaac |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1435755 |
attaatgctcttaatgttgaatttcaaaagttccagtttcaaactaaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatggctctcaac |
1435854 |
T |
|
| Q |
222 |
ctccgcttgagtggccaatgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtgaccctaagattattcaccgtga |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1435855 |
ctccgcttgagtggccaatgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtgaccctaagattattcaccgtga |
1435954 |
T |
|
| Q |
322 |
tgtgaaagctgcaaatatattgttggatgaggaatttgaagcanttgttggagatnttggttangccntgcttatg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||| |
|
|
| T |
1435955 |
tgtgaaagctgcaaatatattgttggatgaggaatttgaagcaattgttggagattttggttatgcaatgcttatg |
1436030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 122 - 342
Target Start/End: Complemental strand, 21019802 - 21019576
Alignment:
| Q |
122 |
attaatgctcttaatgttgaatttcaaaagttccagtttcaaactaa---aaccgcgtctatgtatattgattctgttgttgtagaacgtaatggctctc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21019802 |
attaatgctcttaatgttgaatttcaaaagttccagtttcaaactaataaaaccgcgactatgtatattgattctgttgttgtagaacgtaatgactctc |
21019703 |
T |
|
| Q |
219 |
aacctccgcttgagtggccaatgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtgac---cctaagattattca |
315 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
21019702 |
aacctccgcttgactggacaatgcggaagaatattgcagtgggatctgccagggggattgcttacttgcattatagttatgaccctcctaagattattca |
21019603 |
T |
|
| Q |
316 |
ccgtgatgtgaaagctgcaaatatatt |
342 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
21019602 |
ccgtgatgtgaaagctgcaaacatatt |
21019576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 136 - 376
Target Start/End: Original strand, 1448592 - 1448832
Alignment:
| Q |
136 |
tgttgaatttcaaaagttccagtttcaaactaaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatggctctcaacctccgcttgagtgg |
235 |
Q |
| |
|
|||| |||| ||||| || |||||||| | || ||| || |||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||| ||| |
|
|
| T |
1448592 |
tgttaaattccaaaatttgcagtttcatattataactgcatctatgtatattgattgtgtttttgtagaacgtaatgactctcaaccgccgcttgactgg |
1448691 |
T |
|
| Q |
236 |
ccaatgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtgaccctaagattattcaccgtgatgtgaaagctgcaa |
335 |
Q |
| |
|
||||||||||| ||||||||| | ||| ||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1448692 |
ccaatgcggaagaatattgcgctaggagctgccagggggcttgcttacttgcatgatcattgtgaccctaagattattcatcgtgatgtgaaagctgcaa |
1448791 |
T |
|
| Q |
336 |
atatattgttggatgaggaatttgaagcanttgttggagat |
376 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
1448792 |
atatattgttggatgatgaatttgtagcagttgttggagat |
1448832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 1436216 - 1436342
Alignment:
| Q |
1 |
attgcttgattgggtaggttttcctttaactttaaatatgtcattagtagttgaacaattttgttaaccgtgtatttacggtgatttttagttaaattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1436216 |
attgcttgattgggtaggttttcctttaactttaaatatgtcattagtagttgaacaattttgttaaccgtgtatttacggtgatttttagttaaattct |
1436315 |
T |
|
| Q |
101 |
gcctccaacactgtggcatgcattaat |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1436316 |
gcctccaacactgtggcatgcattaat |
1436342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 201 - 376
Target Start/End: Original strand, 1441253 - 1441428
Alignment:
| Q |
201 |
tagaacgtaatggctctcaacctccgcttgagtggccaatgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtga |
300 |
Q |
| |
|
|||||||||||| |||||| || ||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||| || |||||| |
|
|
| T |
1441253 |
tagaacgtaatgactctcagccgccgcttgagtggccaatgcggaagaatattgcgctgggagctgccagggggcttgcttacttgcatgatcattgtga |
1441352 |
T |
|
| Q |
301 |
ccctaagattattcaccgtgatgtgaaagctgcaaatatattgttggatgaggaatttgaagcanttgttggagat |
376 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1441353 |
ccctaagattattcatcgtgatgtgaaagcagcgaatatattgttggatgaggaatttgaagcagttgttggagat |
1441428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 136 - 376
Target Start/End: Original strand, 1455348 - 1455588
Alignment:
| Q |
136 |
tgttgaatttcaaaagttccagtttcaaactaaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatggctctcaacctccgcttgagtgg |
235 |
Q |
| |
|
||||||||||||||| || |||||||| | || ||| | |||||||||||| || |||||||||||||||||||| ||||||||| || ||||| ||| |
|
|
| T |
1455348 |
tgttgaatttcaaaatttgcagtttcatattataactccatctatgtatattctttttgttgttgtagaacgtaatgcctctcaaccgccacttgattgg |
1455447 |
T |
|
| Q |
236 |
ccaatgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtgaccctaagattattcaccgtgatgtgaaagctgcaa |
335 |
Q |
| |
|
|||||| |||| ||||||| | ||||| |||||| |||| | |||||||||||| || |||||| |||||| ||||||| |||||||||||||| || | |
|
|
| T |
1455448 |
ccaatgaggaagaatattgggctgggagctgccaaggggctggcttacttgcatgatcattgtgatcctaaggttattcatcgtgatgtgaaagcagcga |
1455547 |
T |
|
| Q |
336 |
atatattgttggatgaggaatttgaagcanttgttggagat |
376 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1455548 |
atatattgttggatgaggaatttgaagcagttgttggagat |
1455588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 130 - 376
Target Start/End: Original strand, 1429153 - 1429399
Alignment:
| Q |
130 |
tcttaatgttgaatttcaaaagttccagtttcaaactaaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatggctctcaacctccgctt |
229 |
Q |
| |
|
||||| ||||||| |||||| || |||||||| | |||||| | || | || |||||||| || ||||||||||||||| | | | || |||||| |
|
|
| T |
1429153 |
tcttactgttgaaaatcaaaatttgcagtttcatattaaaactgtgttttggtgtattgattttgatgttgtagaacgtaacgaggttgatccgccgctt |
1429252 |
T |
|
| Q |
230 |
gagtggccaatgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtgaccctaagattattcaccgtgatgtgaaag |
329 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||| || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
1429253 |
gagtggccaatgcggaagaatattgcactgggatctgccagagggcttgcttacttgcatgatcactgtgaccctaagattattcatcgtgatgtgaaag |
1429352 |
T |
|
| Q |
330 |
ctgcaaatatattgttggatgaggaatttgaagcanttgttggagat |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
1429353 |
ctgcaaatatattgttggatgaggaatttgaagcagttgtgggagat |
1429399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 1429610 - 1429734
Alignment:
| Q |
2 |
ttgcttgattgggtaggttttcctttaactttaaat-atgtcattagtagttgaacaatttt-gttaaccgtgtatttacggtgatttttagttaaattc |
99 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||| |||||||||||| |||||||||||| |||||| || | ||||| ||||||||| ||||| ||| |
|
|
| T |
1429610 |
ttgcttgattgggtaggttttcaattatcttaaaaacatgtcattagtatttgaacaatttttgttaactgtctgtttacagtgatttttggttaagttc |
1429709 |
T |
|
| Q |
100 |
tgcctccaacactgtggcatgcatt |
124 |
Q |
| |
|
||| |||||||| ||||||||||| |
|
|
| T |
1429710 |
tgcatccaacaccatggcatgcatt |
1429734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 1455859 - 1455927
Alignment:
| Q |
59 |
ttttgttaaccgtgtatttacggtgatttttagttaaattctgcctccaacactgtggcatgcattaat |
127 |
Q |
| |
|
||||||||||||||||||||| || |||||| ||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
1455859 |
ttttgttaaccgtgtatttaccgtcatttttggttgaattctgcttccaacaccgtggcatgcattaat |
1455927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 21018079 - 21018023
Alignment:
| Q |
2 |
ttgcttgattgggtaggttttcctttaactttaaatatgtcattagtagttgaacaa |
58 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
21018079 |
ttgcttgatttggtaggttttcctttaactataaatatgtttttagttgttgaacaa |
21018023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 43826635 - 43826570
Alignment:
| Q |
295 |
ttgtgaccctaagattattcaccgtgatgtgaaagctgcaaatatattgttggatgaggaatttga |
360 |
Q |
| |
|
||||||||| || || ||||| ||||| ||||||||||| || |||||||||||||| || ||||| |
|
|
| T |
43826635 |
ttgtgacccaaaaatcattcatcgtgacgtgaaagctgctaacatattgttggatgaagagtttga |
43826570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13693 times since January 2019
Visitors: 8302