View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-5-6 (Length: 591)
Name: J5-5-6
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-6 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 165 - 548
Target Start/End: Complemental strand, 24507543 - 24507159
Alignment:
| Q |
165 |
atgcatgtgtaattaaaatcttcatccaactttttaccnnnnnnnnt-cttcatccaactcgactatcttaattttgtggataagaatctctttgaagtg |
263 |
Q |
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| T |
24507543 |
atgcatgtgtaattaaaatcttcatccaactttttaccaaaaaaaatacttcatccaactcgactatcttaattttgtggataagaatctctttgaagtg |
24507444 |
T |
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| Q |
264 |
gtgtcaaacccaacaagtgagtacttcttttagttgatattcaaagttcctttcgtcatattgttctttcattaaactcaactcttgataatctttatga |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24507443 |
gtgtcaaacccaacaagtgagtacttcttttagttgatattcaaagttcctttcgtcatattgttctttcattagactcaactcttgataatctttatga |
24507344 |
T |
|
| Q |
364 |
tagattgtatgaaaatggttatgaaaattggagaaaagccaggtataaagaaaaagaagtactatcattaaaaatcgcagcgaagaaaagtataggacaa |
463 |
Q |
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| T |
24507343 |
tagattgtatgaaaatggttatgaaaattggagaaaagccaggtataaagaaaaagaagtactatcattaaaaatcgcagcgaagaaaagtataggacaa |
24507244 |
T |
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| Q |
464 |
gaatgcacacactgtcgcacaatatgaaaaacaaaatcattgggttgaagtacaagagagagatccagggtaggtgacattaatc |
548 |
Q |
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| T |
24507243 |
gaatgcacacactgtcgcacaatatgaaaaacaaaatcattgggttgaagtacaagagagagatccaaggtaggtgacattaatc |
24507159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 24507707 - 24507575
Alignment:
| Q |
1 |
aatagtattcattttcaagttccataatatggtgtttagtttgctagctcatgtaaacattttaatgttcattttggactccacttatgtatcattaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24507707 |
aatagtattcattttcaagttccataatatggtgtttagtttactagctcatgtaaacattttaatgttcattttggactccacttatgtatcattaaag |
24507608 |
T |
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| Q |
101 |
tcggaattggtcataagtcaatccaactatttg |
133 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
24507607 |
tcggaattggtcataagtcaatccaactatttg |
24507575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 542 - 574
Target Start/End: Complemental strand, 24508054 - 24508022
Alignment:
| Q |
542 |
attaatcaatcccctcatctctgatcataaata |
574 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
24508054 |
attaatcaatcccctcatctctgatcataaata |
24508022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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