View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-5-73 (Length: 591)
Name: J5-5-73
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] J5-5-73 |
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[»] scaffold0061 (3 HSPs) |
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[»] scaffold0017 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 17810694 - 17810316
Alignment:
Q |
1 |
atcaggaggaatcccaacttgtgtaatgaattttactgcaatgactcaagacaccgtgaactcaacttcatcgaagaatcatgggtatacaatcagtacg |
100 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
17810694 |
atcaggaggaatcccaacttgtgtaatgaattttactgcaatgactcaagacaccgtgaactcaacttcatcgaagaatcatgggtatacaatcagtacg |
17810595 |
T |
|
Q |
101 |
gctacttcatttttggaaatatattatgatttcacctcgttcctgacgtggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
17810594 |
gctacttcatttttggaaatatattatgatttcacctcgttcctgacgtggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagca |
17810495 |
T |
|
Q |
201 |
ttgatctttcaagcaaccatcttacaggggacataccagctgaaattgagtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtgg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
17810494 |
ttgatctttcaagcaaccatcttacaggggacataccagctgaaattgagtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtgg |
17810395 |
T |
|
Q |
301 |
ggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttgatctgtcaagaaatcatctgtcaggcagaatt |
379 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
17810394 |
ggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttgatctgtcaagaaatcatctgtcaggcagaatt |
17810316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 376 - 571
Target Start/End: Complemental strand, 17811134 - 17810939
Alignment:
Q |
376 |
aattggatttatgtagggtgcaacaaaagtaagaccaacattttgggaattttggatttatcaaacaatgaattaaagggtgagttgcctgattgttgga |
475 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
17811134 |
aattggatttatgtagggtgcaacaaaagtaagaccaacattttgggaattttggatttatcaaacaatgaattaaagggtgagttgcctgattgttgga |
17811035 |
T |
|
Q |
476 |
ataacttagcatcattacaatttgttgacctcagaaataacaagttgtcaggaaagattcccttctcaatgggggnccttggtaacatggaggctt |
571 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |
|
|
T |
17811034 |
ataacttagcatcattacaatttgttgacctcagaaataacaagttgtcaggaaagattcccttctcaatgggtgcccttgttaacatggaggctt |
17810939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 148 - 379
Target Start/End: Original strand, 35900325 - 35900556
Alignment:
Q |
148 |
gtggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctgaaatt |
247 |
Q |
|
|
||||||||| |||||||||| ||||| | || || || ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
T |
35900325 |
gtggaaaggggtagaccaactttacataaatccttataggtttttaaaaacaattgatctttcaagcaaccatcttacaggggaaataccagttgaaatg |
35900424 |
T |
|
Q |
248 |
gagtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttg |
347 |
Q |
|
|
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| | ||||||||||||||||| ||||| |||||||||| |
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|
T |
35900425 |
gagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaacttcaagtcacttgaatttcttg |
35900524 |
T |
|
Q |
348 |
atctgtcaagaaatcatctgtcaggcagaatt |
379 |
Q |
|
|
|||| |||||||||||||| ||||| |||||| |
|
|
T |
35900525 |
atctctcaagaaatcatctttcaggaagaatt |
35900556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 148 - 379
Target Start/End: Original strand, 44613887 - 44614118
Alignment:
Q |
148 |
gtggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctgaaatt |
247 |
Q |
|
|
|||||||||||| |||||| | |||| |||| ||| ||||||||||| ||||||||| ||||||||||||||||| ||||| |||||| | ||| || |
|
|
T |
44613887 |
gtggaaaggtgtggaccaagacttcaaaaatgcagataagtttttaaaaaccattgatctctcaagcaaccatcttactggggaaataccatcggaagtt |
44613986 |
T |
|
Q |
248 |
gagtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttg |
347 |
Q |
|
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||| |
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|
T |
44613987 |
caatacttaattggattgatttccttaaatttgtcaaggaacaatctcagtggggaaatcatttcaaacataggaaacttcaagttacttgaatttcttg |
44614086 |
T |
|
Q |
348 |
atctgtcaagaaatcatctgtcaggcagaatt |
379 |
Q |
|
|
|||||||||||||| ||| ||||| |||||| |
|
|
T |
44614087 |
atctgtcaagaaattgtctttcaggtagaatt |
44614118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 149 - 379
Target Start/End: Complemental strand, 11543327 - 11543097
Alignment:
Q |
149 |
tggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctgaaattg |
248 |
Q |
|
|
|||||||||||||| ||||| |||| | |||| ||| | ||||||||||||||||| | ||||||||||||||||||||||| |||||| ||||||| |
|
|
T |
11543327 |
tggaaaggtgtagatcaaccctacagaaatgcagataggcttttaaaaagcattgatatgtcaagcaaccatcttacaggggaaataccaatggaaattg |
11543228 |
T |
|
Q |
249 |
agtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttga |
348 |
Q |
|
|
|||| || ||||||||||||| |||||||||||||| ||||||||||||||| || | ||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
T |
11543227 |
agtatttaattggattgatttcattaaatttgtcaagaaacaatctcagtgggaaaataattgcaaacataggaaacttcaagtcacttgaatttcttga |
11543128 |
T |
|
Q |
349 |
tctgtcaagaaatcatctgtcaggcagaatt |
379 |
Q |
|
|
|||||||||||| | ||| |||||||||||| |
|
|
T |
11543127 |
tctgtcaagaaaccgtctttcaggcagaatt |
11543097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 427 - 548
Target Start/End: Original strand, 35899798 - 35899919
Alignment:
Q |
427 |
ttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataacttagcatcattacaatttgttgacctcagaaataacaagttgtcag |
526 |
Q |
|
|
||||| || ||||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||| | ||||||| ||||||||||||||||| | |
|
|
T |
35899798 |
ttggacttgtcaaacaatgaattaaagggtgagttgtctgattgttggaataatttatcctcattacaatatattgacctgagaaataacaagttgtctg |
35899897 |
T |
|
Q |
527 |
gaaagattcccttctcaatggg |
548 |
Q |
|
|
|||||||||||||||||||||| |
|
|
T |
35899898 |
gaaagattcccttctcaatggg |
35899919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 44146311 - 44146426
Alignment:
Q |
264 |
tgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttgatctgtcaagaaatca |
363 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||| | |||||||||||||| |||||||||| |
|
|
T |
44146311 |
tgatttccttaaatttgtcaaggaacaatctcagtggggaaatcatttcaaacataggaaactttaactcattagaatttcttgatctttcaagaaatcg |
44146410 |
T |
|
Q |
364 |
tctgtcaggcagaatt |
379 |
Q |
|
|
||| ||||||| |||| |
|
|
T |
44146411 |
tctttcaggcaaaatt |
44146426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 394 - 548
Target Start/End: Original strand, 44613388 - 44613542
Alignment:
Q |
394 |
tgcaacaaaagtaagaccaacattttgggaattttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataacttagcatcattac |
493 |
Q |
|
|
||||||| |||||| | |||||||||| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| || | || ||| |
|
|
T |
44613388 |
tgcaacagaagtaattctaacattttggaaattttggatttatcaaacaatcaaataaagggtgagttacctgattgttggaataatctaacctcgttaa |
44613487 |
T |
|
Q |
494 |
aatttgttgacctcagaaataacaagttgtcaggaaagattcccttctcaatggg |
548 |
Q |
|
|
||||||||||| | ||||||||||| || | ||||||||||| ||||||||||| |
|
|
T |
44613488 |
aatttgttgacttaagaaataacaaattatggggaaagattccattctcaatggg |
44613542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 425 - 564
Target Start/End: Complemental strand, 11543860 - 11543721
Alignment:
Q |
425 |
ttttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataacttagcatcattacaatttgttgacctcagaaataacaagttgtc |
524 |
Q |
|
|
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| ||| | || || | | |||||||||||| |||||||||||||| |
|
|
T |
11543860 |
ttttggatatatcaaacaatcaattaaagggtgagctgcctgattgttggaataatttaacctcgctatactatgttgacctcagtaataacaagttgtc |
11543761 |
T |
|
Q |
525 |
aggaaagattcccttctcaatgggggnccttggtaacatg |
564 |
Q |
|
|
|||||||| || || || ||||| | ||||| ||||||| |
|
|
T |
11543760 |
gggaaagatcccattgtcgatgggtgcccttgttaacatg |
11543721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 421 - 479
Target Start/End: Complemental strand, 44794904 - 44794846
Alignment:
Q |
421 |
ggaattttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataa |
479 |
Q |
|
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
T |
44794904 |
ggaattttggatatatcaaacaatgaattaaagggagagttgcctgattgttggaataa |
44794846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 44794451 - 44794352
Alignment:
Q |
148 |
gtggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctgaaatt |
247 |
Q |
|
|
|||||||||||| |||||| | |||| |||| ||| ||||||||||| ||||||||| |||||||||||||||||||| || |||||| |||||||| |
|
|
T |
44794451 |
gtggaaaggtgtggaccaagacttcaaaaatgcagataagtttttaaaaaccattgatctctcaagcaaccatcttacaggcgaaataccaactgaaatt |
44794352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 571
Target Start/End: Original strand, 44145769 - 44145829
Alignment:
Q |
511 |
aataacaagttgtcaggaaagattcccttctcaatgggggnccttggtaacatggaggctt |
571 |
Q |
|
|
|||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||| |
|
|
T |
44145769 |
aataacaagttgtcaggaaagattccaatctcaatgggtgccctttctaacatggaggctt |
44145829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 44146259 - 44146313
Alignment:
Q |
189 |
ttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctga |
243 |
Q |
|
|
||||||||| ||||||||| ||||||||||||||||||||| | |||||| |||| |
|
|
T |
44146259 |
ttttaaaaaccattgatctctcaagcaaccatcttacagggtaaataccaactga |
44146313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 44146077 - 44146119
Alignment:
Q |
1 |
atcaggaggaatcccaacttgtgtaatgaattttactgcaatg |
43 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||| ||||| |
|
|
T |
44146077 |
atcaggaggaatcccaacttgtgtaaataattttacttcaatg |
44146119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 44794334 - 44794276
Alignment:
Q |
321 |
gaaacttcaaatcactcgaatttcttgatctgtcaagaaatcatctgtcaggcagaatt |
379 |
Q |
|
|
||||||| || ||| | |||||||||||||| |||||||||||| ||||||||| |||| |
|
|
T |
44794334 |
gaaactttaactcattagaatttcttgatctttcaagaaatcatttgtcaggcaaaatt |
44794276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 548
Target Start/End: Complemental strand, 44794841 - 44794796
Alignment:
Q |
503 |
acctcagaaataacaagttgtcaggaaagattcccttctcaatggg |
548 |
Q |
|
|
||||||| ||||| |||||| ||||||||||||| ||||||||||| |
|
|
T |
44794841 |
acctcagcaataataagttgacaggaaagattccattctcaatggg |
44794796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35900184 - 35900220
Alignment:
Q |
1 |
atcaggaggaatcccaacttgtgtaatgaattttact |
37 |
Q |
|
|
|||||||||||||||||||||||||| |||| ||||| |
|
|
T |
35900184 |
atcaggaggaatcccaacttgtgtaaagaatcttact |
35900220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 149 - 373
Target Start/End: Complemental strand, 28032 - 27808
Alignment:
Q |
149 |
tggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctgaaattg |
248 |
Q |
|
|
|||||||||||||||||| |||||| |||| ||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||| | |
|
|
T |
28032 |
tggaaaggtgtagaccaatggtacaaaaatgcagataagtttttaaaaaccattgatctctcaagcaaccatcttacaggggaaataccaactgaaatgg |
27933 |
T |
|
Q |
249 |
agtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttga |
348 |
Q |
|
|
||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| || |
|
|
T |
27932 |
agtacttatttggtttgatttcattaaatttgtcaaggaacaatctcagtggggaaatcattttaaacataggaaacttcaaatcacttgaatttctaga |
27833 |
T |
|
Q |
349 |
tctgtcaagaaatcatctgtcaggc |
373 |
Q |
|
|
|||||||||||||||| |||||||| |
|
|
T |
27832 |
tctgtcaagaaatcatttgtcaggc |
27808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 412 - 571
Target Start/End: Complemental strand, 28575 - 28416
Alignment:
Q |
412 |
aacattttgggaattttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataacttagcatcattacaatttgttgacctcagaa |
511 |
Q |
|
|
|||||||||| | ||||||| || ||||||||||||||||||| ||||||||||||||||||||||| || | |||||| |||||||||||||||| | |
|
|
T |
28575 |
aacattttggaagttttggaaatagcaaacaatgaattaaagggcgagttgcctgattgttggaataatctaacctcattaaaatttgttgacctcagca |
28476 |
T |
|
Q |
512 |
ataacaagttgtcaggaaagattcccttctcaatgggggnccttggtaacatggaggctt |
571 |
Q |
|
|
||||||| || | ||||| |||||| |||||||||| | ||||| |||||||||||||| |
|
|
T |
28475 |
ataacaaattatggggaaaaattcccatctcaatgggtgcccttgttaacatggaggctt |
28416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28171 - 28106
Alignment:
Q |
1 |
atcaggaggaatcccaacttgtgtaatgaattttactgcaatgactcaagacaccgtgaactcaac |
66 |
Q |
|
|
||||||||||||||| |||||||||| ||||| ||| ||||| |||| |||||| ||| |||||| |
|
|
T |
28171 |
atcaggaggaatccccacttgtgtaaacaatttaacttcaatggctcaggacaccatgagctcaac |
28106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 145; Significance: 5e-76; HSPs: 6)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 149 - 373
Target Start/End: Original strand, 170760 - 170984
Alignment:
Q |
149 |
tggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctgaaattg |
248 |
Q |
|
|
|||||||||||||||||| |||||| |||| ||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||| | |
|
|
T |
170760 |
tggaaaggtgtagaccaatggtacaaaaatgcagataagtttttaaaaaccattgatctctcaagcaaccatcttacaggggaaataccaactgaaatgg |
170859 |
T |
|
Q |
249 |
agtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttga |
348 |
Q |
|
|
||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| || |
|
|
T |
170860 |
agtacttatttggtttgatttcattaaatttgtcaaggaacaatctcagtggggaaatcattttaaacataggaaacttcaaatcacttgaatttctaga |
170959 |
T |
|
Q |
349 |
tctgtcaagaaatcatctgtcaggc |
373 |
Q |
|
|
|||||||||||||||| |||||||| |
|
|
T |
170960 |
tctgtcaagaaatcatttgtcaggc |
170984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 143 - 379
Target Start/End: Original strand, 181841 - 182077
Alignment:
Q |
143 |
ctgacgtggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctg |
242 |
Q |
|
|
|||| ||||||||||| |||| || |||||| |||| ||| ||||||||||| |||||||| ||||||||| ||||||||||||| |||||| ||| |
|
|
T |
181841 |
ctgatgtggaaaggtgcagacagacggtacaaaaatgcagataagtttttaaaaacgattgatctctcaagcaacaatcttacaggggaaataccaactg |
181940 |
T |
|
Q |
243 |
aaattgagtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatt |
342 |
Q |
|
|
|||| | ||||| ||| ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
T |
181941 |
aaatgcaatacttagttgcattgatttcattaaatttgtcaaggaacaatctccgtggggaaatcatttcaaacataggaaacttcaagtcactcgaatt |
182040 |
T |
|
Q |
343 |
tcttgatctgtcaagaaatcatctgtcaggcagaatt |
379 |
Q |
|
|
||||||||||||||||||| |||||||||| |||||| |
|
|
T |
182041 |
tcttgatctgtcaagaaataatctgtcaggaagaatt |
182077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 394 - 548
Target Start/End: Original strand, 181286 - 181440
Alignment:
Q |
394 |
tgcaacaaaagtaagaccaacattttgggaattttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataacttagcatcattac |
493 |
Q |
|
|
|||| |||||||||| | | || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| | ||||||| |
|
|
T |
181286 |
tgcagcaaaagtaagccaagcaatttggtaattttggatttatcaagcaatgaattaaagggtgagttgcctgattgttggaatgatttaacctcattac |
181385 |
T |
|
Q |
494 |
aatttgttgacctcagaaataacaagttgtcaggaaagattcccttctcaatggg |
548 |
Q |
|
|
||| |||||| || || |||||||||||||| ||||||||||||||||||||||| |
|
|
T |
181386 |
aatatgttgatctgagcaataacaagttgtccggaaagattcccttctcaatggg |
181440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 412 - 571
Target Start/End: Original strand, 170217 - 170376
Alignment:
Q |
412 |
aacattttgggaattttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataacttagcatcattacaatttgttgacctcagaa |
511 |
Q |
|
|
|||||||||| | ||||||| || ||||||||||||||||||| ||||||||||||||||||||||| || | |||||| |||||||||||||||| | |
|
|
T |
170217 |
aacattttggaagttttggaaatagcaaacaatgaattaaagggcgagttgcctgattgttggaataatctaacctcattaaaatttgttgacctcagca |
170316 |
T |
|
Q |
512 |
ataacaagttgtcaggaaagattcccttctcaatgggggnccttggtaacatggaggctt |
571 |
Q |
|
|
||||||| || | ||||| |||||| |||||||||| | ||||| |||||||||||||| |
|
|
T |
170317 |
ataacaaattatggggaaaaattcccatctcaatgggtgcccttgttaacatggaggctt |
170376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 181708 - 181755
Alignment:
Q |
1 |
atcaggaggaatcccaacttgtgtaatgaattttactgcaatgactca |
48 |
Q |
|
|
|||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
T |
181708 |
atcaggaggaatcccaacttgtgtaaagaattttacttcaatgactca |
181755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 170621 - 170686
Alignment:
Q |
1 |
atcaggaggaatcccaacttgtgtaatgaattttactgcaatgactcaagacaccgtgaactcaac |
66 |
Q |
|
|
||||||||||||||| |||||||||| ||||| ||| ||||| |||| |||||| ||| |||||| |
|
|
T |
170621 |
atcaggaggaatccccacttgtgtaaacaatttaacttcaatggctcaggacaccatgagctcaac |
170686 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 148 - 379
Target Start/End: Complemental strand, 29227757 - 29227526
Alignment:
Q |
148 |
gtggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctgaaatt |
247 |
Q |
|
|
||||||||||||| |||||| ||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||| |||||| ||||||| |
|
|
T |
29227757 |
gtggaaaggtgtaaaccaacgttacaaaaatgctgataggtttttaaaaaccattgatctctcaagcaaccatcttacgggggaaataccaactgaaatg |
29227658 |
T |
|
Q |
248 |
gagtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttg |
347 |
Q |
|
|
|| ||| |||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
29227657 |
aagcgcttatttggattgattgccttaaatttgtcaaggaacaatctcagcgtggaaatcatttcaaacataggaaacttcaaatcactcgaatttcttg |
29227558 |
T |
|
Q |
348 |
atctgtcaagaaatcatctgtcaggcagaatt |
379 |
Q |
|
|
||||||||||||||| ||| ||||| |||||| |
|
|
T |
29227557 |
atctgtcaagaaatcgtctttcaggtagaatt |
29227526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 148 - 379
Target Start/End: Complemental strand, 29341056 - 29340825
Alignment:
Q |
148 |
gtggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctgaaatt |
247 |
Q |
|
|
||||||||||||| |||||| ||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||| |||||| ||||||| |
|
|
T |
29341056 |
gtggaaaggtgtaaaccaacgttacaaaaatgctgataggtttttaaaaaccattgatctctcaagcaaccatcttacgggggaaataccaactgaaatg |
29340957 |
T |
|
Q |
248 |
gagtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttg |
347 |
Q |
|
|
|| ||| |||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
29340956 |
aagcgcttatttggattgattgccttaaatttgtcaaggaacaatctcagcgtggaaatcatttcaaacataggaaacttcaaatcactcgaatttcttg |
29340857 |
T |
|
Q |
348 |
atctgtcaagaaatcatctgtcaggcagaatt |
379 |
Q |
|
|
||||||||||||||| ||| ||||| |||||| |
|
|
T |
29340856 |
atctgtcaagaaatcgtctttcaggtagaatt |
29340825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 5e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 148 - 379
Target Start/End: Original strand, 26729504 - 26729735
Alignment:
Q |
148 |
gtggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctgaaatt |
247 |
Q |
|
|
||||||||||| ||||||||| |||||| |||| ||| |||||||||||||||||||||| ||||||||| ||||| |||||| |||||| ||||||| |
|
|
T |
26729504 |
gtggaaaggtgaagaccaaccctacaaaaatgcagatatgtttttaaaaagcattgatctctcaagcaactatcttttaggggaaataccaactgaaatg |
26729603 |
T |
|
Q |
248 |
gagtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttg |
347 |
Q |
|
|
||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| |||||||||| |
|
|
T |
26729604 |
gagtatttagttggattgatttccttaaatttgtcaaggaacaatcttagtggggaaataatttcaaacataggaaacttcaaatcacttgaatttcttg |
26729703 |
T |
|
Q |
348 |
atctgtcaagaaatcatctgtcaggcagaatt |
379 |
Q |
|
|
|||| ||||| |||||| ||||||| |||||| |
|
|
T |
26729704 |
atctatcaagtaatcatttgtcaggaagaatt |
26729735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 394 - 571
Target Start/End: Original strand, 26728935 - 26729112
Alignment:
Q |
394 |
tgcaacaaaagtaagaccaacattttgggaattttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataacttagcatcattac |
493 |
Q |
|
|
|||| |||||||||| | |||||||||| || |||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
T |
26728935 |
tgcagcaaaagtaagcctaacattttggcgatgttggatttatcaaacaatcaattaaaggacgagttgcctgattgttggaataatttagcatcattac |
26729034 |
T |
|
Q |
494 |
aatttgttgacctcagaaataacaagttgtcaggaaagattcccttctcaatgggggnccttggtaacatggaggctt |
571 |
Q |
|
|
| | ||||||| | || ||||||||||||| ||||| ||||| | ||||||||| | |||| |||||| ||||||| |
|
|
T |
26729035 |
actatgttgacttgagcaataacaagttgtggggaaatattccatcctcaatgggtgctcttgttaacatagaggctt |
26729112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 417 - 548
Target Start/End: Original strand, 8343365 - 8343496
Alignment:
Q |
417 |
tttgggaattttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataacttagcatcattacaatttgttgacctcagaaataac |
516 |
Q |
|
|
||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||| | | | ||||||| || |||||| |
|
|
T |
8343365 |
tttgggacttttggatgtatcaaacaatgaattaaagggtgagttgcccgattgttggaataatttaacctcattatactatcttgaccttagtaataac |
8343464 |
T |
|
Q |
517 |
aagttgtcaggaaagattcccttctcaatggg |
548 |
Q |
|
|
|||||||| ||||||||||| ||||||||||| |
|
|
T |
8343465 |
aagttgtcgggaaagattccattctcaatggg |
8343496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 187 - 379
Target Start/End: Complemental strand, 29506371 - 29506179
Alignment:
Q |
187 |
gtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctgaaattgagtacttgtttggattgatttccttaaatttgtcaagg |
286 |
Q |
|
|
||||||||| ||||||||||| ||||||||||| |||| ||| || |||||| | |||||||||||||| ||||||||| |||||||||||||||||| |
|
|
T |
29506371 |
gtttttaaacagcattgatctctcaagcaaccaccttataggagaaataccaacagaaattgagtacttacttggattgacatccttaaatttgtcaagg |
29506272 |
T |
|
Q |
287 |
aacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttgatctgtcaagaaatcatctgtcaggcagaatt |
379 |
Q |
|
|
|||||||| ||||||||| | |||||| |||||||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||| |||| |
|
|
T |
29506271 |
aacaatcttagtggggaaataatttcagacataggaaaattcaagtcacttgaatttcttgatctatcaagaaatcatctatcaggcacaatt |
29506179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 394 - 571
Target Start/End: Complemental strand, 29506982 - 29506805
Alignment:
Q |
394 |
tgcaacaaaagtaagaccaacattttgggaattttggatttatcaaacaatgaattaaagggtgagttgcctgattgttggaataacttagcatcattac |
493 |
Q |
|
|
|||||||| |||||| | |||| | ||| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| || | ||||||| |
|
|
T |
29506982 |
tgcaacaatagtaagcctaacaatctggcaatgttggatttgtcaaacaatcaattaaagggtgagttgcctgattgttggaataatctaacctcattac |
29506883 |
T |
|
Q |
494 |
aatttgttgacctcagaaataacaagttgtcaggaaagattcccttctcaatgggggnccttggtaacatggaggctt |
571 |
Q |
|
|
| |||||||| || || |||||||| ||||| || |||||||| ||||||||||| | |||| ||| |||||||||| |
|
|
T |
29506882 |
agtttgttgaactgagcaataacaacttgtcgggtaagattccattctcaatgggtgctcttgttaatatggaggctt |
29506805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 29506560 - 29506490
Alignment:
Q |
1 |
atcaggaggaatcccaacttgtgtaatgaattttactgcaatgactcaagacaccgtgaactcaacttcat |
71 |
Q |
|
|
|||||||||||||||||| ||||||| |||||||||| ||||| |||| | |||| ||||||||||||||| |
|
|
T |
29506560 |
atcaggaggaatcccaacatgtgtaaagaattttacttcaatggctcagggcaccatgaactcaacttcat |
29506490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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