View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-5-74 (Length: 619)
Name: J5-5-74
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-74 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 303 - 618
Target Start/End: Original strand, 51071352 - 51071667
Alignment:
| Q |
303 |
ccgatcatatttgtaccataaagcttgcagtgatcattttccctgcaaaccatcttccatgtaaggcccgctgtgcacttattgcaggttgggtattttc |
402 |
Q |
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| T |
51071352 |
ccgatcatatttgtaccataaagcttgcagtgatcattttccctgcaaaccatcttccatgtaaggcccgctgtgcacttattgcaggttgggtattttc |
51071451 |
T |
|
| Q |
403 |
aaatcgtaggtagacaaatccggcactcctcctgctcacagaaacaataattcaatgaaaatgtcatgattttgtagtctcataggaacataagaattac |
502 |
Q |
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| T |
51071452 |
aaatcgtaggtagacaaatccggcactcctcctgctcacagaaacaataattcaatgaaaatgtcatgattttgtagtctcataggaacataagaattac |
51071551 |
T |
|
| Q |
503 |
tgattaactcacttatcaacatatatatggtttaagttcccnaacttaaagcattctgcttcaacatcttcnttaacatccaaatcaaagtctggntcct |
602 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
51071552 |
tgattaactcacttatcaacatatatatgttttaagttcccaaacttagagcattctgcttcaacatcttctttaacatccaaatcaaagtctggttcct |
51071651 |
T |
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| Q |
603 |
tctgcatcacacaatg |
618 |
Q |
| |
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|||||||||||||||| |
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| T |
51071652 |
tctgcatcacacaatg |
51071667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 51071050 - 51071308
Alignment:
| Q |
1 |
aactgcagctcctaaaagcagcaccttttaacttcttataagtcataagataaatcaaagttccatgtggtgggggtgtatataacataactttgttaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51071050 |
aactgcagctcctaaaagcagcaccttttaacttcttataagtcataagataaatcaaagttccatgtggtgggggtgtatataacataactttgttaaa |
51071149 |
T |
|
| Q |
101 |
ataaaatctcaaatatttctgagaatgctaatttctgccacaggattccctatcattccaatggacccccgataactcatttgctgtctgggaatcgatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51071150 |
ataaaatctcaaatatttctgagaatgctaatttctgccacaggattccctatcattccaatggacccccgataactcatttgctgtctgggaatcgatc |
51071249 |
T |
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| Q |
201 |
ctcatataactggggcacctgccatcatatgcaggatttattaaacttctggttagggg |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51071250 |
ctcatataactggggcacctgccatcatatgcaggatttattaaacttctggttagggg |
51071308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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