View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-5-75 (Length: 636)
Name: J5-5-75
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-75 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 249365 - 248790
Alignment:
| Q |
1 |
ccacaaccactatcagtgttgagggaattgtttattgtgatacctgctcaaccggcactttctctaaacacagttatctcttgccaggtatgtatgtatg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249365 |
ccacaaccactatcagtgttgagggaattgtttattgtgatgcctgctcaaccggcactttctctaaacacagttatctcttgccaggtatgtatgtatg |
249266 |
T |
|
| Q |
101 |
taccaagtaccttgttctttctcatgcaatatacacatggttattatattcagtcacttttattttcttaaatcattaccagtgtctatgtgtatgtgtt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249265 |
taccaagtaccttgttctttctcatgcaatatacacatggttattatattcagtcacttttattttcttaaatcattaccagtgtctatgtgtatgtgtt |
249166 |
T |
|
| Q |
201 |
agtgtttggcgtctatgtctgaactttatatatagattataagcaaatgaatgaattgattatatatgtcaggtgttgacgttcatatagagtgcagatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249165 |
agtgtttggcgtctatgtctgaactttatatatagattataagcaaatgaatgaattgattatatatgtcaggtgttgacgttcatatagagtgcagatt |
249066 |
T |
|
| Q |
301 |
tagagcaagctcaccaagaaccaacgaacagataaatttctcagtgaacagaacaacagacagagagggagcatacaaattagatataccatcagtggat |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
249065 |
tagagcaagctcaccaagaaccaacgaacagataaatttctcagtgaacagaacaacagacagagagggagcatacaaattagatataccatcagtggat |
248966 |
T |
|
| Q |
401 |
ggaactaactgtaaaattgccatggatggtaaattcacagattgtgtctctctgccaagcaagcttggataggaacntcatcatcttcttattcttgcaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
248965 |
ggaactaactgtaaaattgccatggatggt-aattcacagattgtgtctctctgccaagcaagctt-gataggaacttcatcatcttcttattcttgcaa |
248868 |
T |
|
| Q |
501 |
tgntcctttcctggaagagcaccgggaagtagtcngatattanaac-agagaataaccnatgngnatacagcctgggagc |
579 |
Q |
| |
|
|| |||||| || |||||||| | |||||||||| ||||||| ||| ||||||||||| ||| | ||||||| ||||||| |
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|
| T |
248867 |
tgttccttt-cttgaagagca-caggaagtagtcagatattaaaacaagagaataacctatgtgtatacagcttgggagc |
248790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 9696077 - 9696028
Alignment:
| Q |
144 |
ttatattcagtcacttttattttcttaaatcattaccagtgtctatgtgt |
193 |
Q |
| |
|
||||||||| |||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
9696077 |
ttatattcaatcacttccatttccttaaattattaccagtgtctatgtgt |
9696028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 17105300 - 17105255
Alignment:
| Q |
148 |
attcagtcacttttattttcttaaatcattaccagtgtctatgtgt |
193 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
17105300 |
attcaatcacttttattttcttaaattattattagtgtctatgtgt |
17105255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 26473302 - 26473347
Alignment:
| Q |
148 |
attcagtcacttttattttcttaaatcattaccagtgtctatgtgt |
193 |
Q |
| |
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|||||| |||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
26473302 |
attcagacacttttattttcttaaactattacaagtgtctatgtgt |
26473347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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